miRNA display CGI


Results 1 - 20 of 176 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14290 3' -59.9 NC_003521.1 + 184359 0.66 0.87558
Target:  5'- gGGCGGGCCGuGgcgcggCGCCucucggaccuggGCcacgagGCGGCCu -3'
miRNA:   3'- -CUGCCUGGC-Caa----GCGG------------CGaa----CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 109487 0.66 0.87558
Target:  5'- cGACGGcACgGGgcgaagCGCUGCa--CGGCCa -3'
miRNA:   3'- -CUGCC-UGgCCaa----GCGGCGaacGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 76842 0.66 0.874901
Target:  5'- gGACGGGagaaggcCCGGcgaccgccaucUUCGgCGUccGCGGCCg -3'
miRNA:   3'- -CUGCCU-------GGCC-----------AAGCgGCGaaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 99673 0.66 0.874221
Target:  5'- cAUGGcCCGGUgcacggggUUGCCGaaggucucggGCGGCCg -3'
miRNA:   3'- cUGCCuGGCCA--------AGCGGCgaa-------CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 129563 0.66 0.873539
Target:  5'- cGGCGGGCCcgacgauGGcugcuccgccgCGCCGCgc-CGGCCg -3'
miRNA:   3'- -CUGCCUGG-------CCaa---------GCGGCGaacGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 44709 0.66 0.873539
Target:  5'- aACGGGCCGGcggaucuauaccgcgCGCCGCauuucgUGCuGCUg -3'
miRNA:   3'- cUGCCUGGCCaa-------------GCGGCGa-----ACGcCGG- -5'
14290 3' -59.9 NC_003521.1 + 74334 0.66 0.868712
Target:  5'- cGCGGcgccccGCUGGauggCGCUGCUgcGCGGCUa -3'
miRNA:   3'- cUGCC------UGGCCaa--GCGGCGAa-CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 196293 0.66 0.868712
Target:  5'- cGCGuGCCGG---GCCGCUugaUGCuGGCCa -3'
miRNA:   3'- cUGCcUGGCCaagCGGCGA---ACG-CCGG- -5'
14290 3' -59.9 NC_003521.1 + 214830 0.66 0.868712
Target:  5'- cGACGG--CGGUUCcauGCUGUUUGCuGCCc -3'
miRNA:   3'- -CUGCCugGCCAAG---CGGCGAACGcCGG- -5'
14290 3' -59.9 NC_003521.1 + 65710 0.66 0.868712
Target:  5'- --aGGACagCGG--CGCCGCg-GCGGCCc -3'
miRNA:   3'- cugCCUG--GCCaaGCGGCGaaCGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 139299 0.66 0.868712
Target:  5'- aGACGGAgCUGcagCGCCuGCUgGuCGGCCg -3'
miRNA:   3'- -CUGCCU-GGCcaaGCGG-CGAaC-GCCGG- -5'
14290 3' -59.9 NC_003521.1 + 197008 0.66 0.868712
Target:  5'- cGGCGGcugacCCGGc-UGCUGCgacaugGCGGCCc -3'
miRNA:   3'- -CUGCCu----GGCCaaGCGGCGaa----CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 45417 0.66 0.868712
Target:  5'- --aGGuaGCCGGUgccCGCCGUcggcGCGGUCa -3'
miRNA:   3'- cugCC--UGGCCAa--GCGGCGaa--CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 136869 0.66 0.868015
Target:  5'- cACGGACUcgcggcgGGUggCGCCGgUguucGCGGUCg -3'
miRNA:   3'- cUGCCUGG-------CCAa-GCGGCgAa---CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 217345 0.66 0.861657
Target:  5'- gGACGGcgGCCGGUccucguacUUGCUGUguaacaCGGCCa -3'
miRNA:   3'- -CUGCC--UGGCCA--------AGCGGCGaac---GCCGG- -5'
14290 3' -59.9 NC_003521.1 + 85372 0.66 0.861657
Target:  5'- cGACGGGCUGcugcgacUCGCCcaGCggGuCGGCCa -3'
miRNA:   3'- -CUGCCUGGCca-----AGCGG--CGaaC-GCCGG- -5'
14290 3' -59.9 NC_003521.1 + 3650 0.66 0.861657
Target:  5'- cACGG-CCGc--CGCCGuCUgccucgGCGGCCg -3'
miRNA:   3'- cUGCCuGGCcaaGCGGC-GAa-----CGCCGG- -5'
14290 3' -59.9 NC_003521.1 + 70524 0.66 0.861657
Target:  5'- cGACGuGACCGccUCG-CGCUcgGCcGGCCg -3'
miRNA:   3'- -CUGC-CUGGCcaAGCgGCGAa-CG-CCGG- -5'
14290 3' -59.9 NC_003521.1 + 218400 0.66 0.861657
Target:  5'- gGGCGGuACuCGGccaCGCCGCgcaGCauGGCCa -3'
miRNA:   3'- -CUGCC-UG-GCCaa-GCGGCGaa-CG--CCGG- -5'
14290 3' -59.9 NC_003521.1 + 164457 0.66 0.861657
Target:  5'- cGCGG-CCGucacggUCGCCGCU-GCcGCCg -3'
miRNA:   3'- cUGCCuGGCca----AGCGGCGAaCGcCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.