miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14300 5' -54.1 NC_003521.1 + 218758 0.66 0.984078
Target:  5'- ----cAUGCUGCGUUCg-CGgGCUCGg -3'
miRNA:   3'- uauauUGCGGCGCGAGaaGCgCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 194364 0.66 0.984078
Target:  5'- cAUAUccuCGUCGCGCUaccgauagUCGCGaCUCGc -3'
miRNA:   3'- -UAUAuu-GCGGCGCGAga------AGCGC-GAGC- -5'
14300 5' -54.1 NC_003521.1 + 114303 0.66 0.984078
Target:  5'- ------gGCUGCGCUCgccuuucUCGCGCUa- -3'
miRNA:   3'- uauauugCGGCGCGAGa------AGCGCGAgc -5'
14300 5' -54.1 NC_003521.1 + 48780 0.66 0.982183
Target:  5'- ---gGACGCCGCG-UCUgcCGCGCa-- -3'
miRNA:   3'- uauaUUGCGGCGCgAGAa-GCGCGagc -5'
14300 5' -54.1 NC_003521.1 + 7774 0.66 0.982183
Target:  5'- ---aGACGCCGCagacgaGC-CUUacaccaGCGCUCGa -3'
miRNA:   3'- uauaUUGCGGCG------CGaGAAg-----CGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 28906 0.66 0.982183
Target:  5'- ---aGACGCUGCGCgacuacaaCGUGCUCu -3'
miRNA:   3'- uauaUUGCGGCGCGagaa----GCGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 5660 0.66 0.982183
Target:  5'- -cAUGACG-CGaCGCcaaUCGCGCUCGg -3'
miRNA:   3'- uaUAUUGCgGC-GCGagaAGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 141741 0.66 0.982183
Target:  5'- ---cGACGCCGgGCUCaUCaCGCUg- -3'
miRNA:   3'- uauaUUGCGGCgCGAGaAGcGCGAgc -5'
14300 5' -54.1 NC_003521.1 + 88956 0.66 0.982183
Target:  5'- ---gAGCGCCGCcagaacCUC-UCGCGuCUCGu -3'
miRNA:   3'- uauaUUGCGGCGc-----GAGaAGCGC-GAGC- -5'
14300 5' -54.1 NC_003521.1 + 43118 0.66 0.982183
Target:  5'- ---aAGCGCUGCGg-Cga-GCGCUCGg -3'
miRNA:   3'- uauaUUGCGGCGCgaGaagCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 28776 0.66 0.982183
Target:  5'- --cUAGCGCUGCaCUUUcUGCGCUCc -3'
miRNA:   3'- uauAUUGCGGCGcGAGAaGCGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 183636 0.66 0.980124
Target:  5'- -gAUGACuccCUGCGCcgCUUCGUGCUgCGg -3'
miRNA:   3'- uaUAUUGc--GGCGCGa-GAAGCGCGA-GC- -5'
14300 5' -54.1 NC_003521.1 + 225760 0.66 0.980124
Target:  5'- cUGUuGCaGCaCGCGCcgC-UCGCGCUCGc -3'
miRNA:   3'- uAUAuUG-CG-GCGCGa-GaAGCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 153008 0.66 0.980124
Target:  5'- ----cACGUCGCGgaUgUCGCGCUCc -3'
miRNA:   3'- uauauUGCGGCGCgaGaAGCGCGAGc -5'
14300 5' -54.1 NC_003521.1 + 74311 0.66 0.980124
Target:  5'- ---cGAgGCCGUGCUCUUCGguCGCc-- -3'
miRNA:   3'- uauaUUgCGGCGCGAGAAGC--GCGagc -5'
14300 5' -54.1 NC_003521.1 + 129590 0.66 0.980124
Target:  5'- ----cGCGCCGCGCcggCcgCGaCGCUCu -3'
miRNA:   3'- uauauUGCGGCGCGa--GaaGC-GCGAGc -5'
14300 5' -54.1 NC_003521.1 + 15811 0.66 0.980124
Target:  5'- ----uGCGCCGagcgGCUCaUCGUGCUgGg -3'
miRNA:   3'- uauauUGCGGCg---CGAGaAGCGCGAgC- -5'
14300 5' -54.1 NC_003521.1 + 172152 0.66 0.980124
Target:  5'- ---cAugGCCGC-CUCUUCcaCGCUCu -3'
miRNA:   3'- uauaUugCGGCGcGAGAAGc-GCGAGc -5'
14300 5' -54.1 NC_003521.1 + 124460 0.66 0.977892
Target:  5'- ---cGGCgGCaCGCGUUCgccgcCGCGCUCGc -3'
miRNA:   3'- uauaUUG-CG-GCGCGAGaa---GCGCGAGC- -5'
14300 5' -54.1 NC_003521.1 + 136884 0.66 0.977892
Target:  5'- -gGUGGCGCCG-GUg-UUCGCGgUCGa -3'
miRNA:   3'- uaUAUUGCGGCgCGagAAGCGCgAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.