miRNA display CGI


Results 1 - 20 of 560 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14309 5' -53 NC_003521.1 + 232816 0.66 0.994618
Target:  5'- gUCUGGaGCuacGGCGC--UGCC-CCGGUa -3'
miRNA:   3'- -AGACCaUGu--UUGCGuuGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 239495 0.66 0.994618
Target:  5'- --cGGUugGAccgauACaGCcGCGCCacucGCCGGCg -3'
miRNA:   3'- agaCCAugUU-----UG-CGuUGCGG----UGGCCG- -5'
14309 5' -53 NC_003521.1 + 216971 0.66 0.994618
Target:  5'- uUCUcGUAgAGACaCAGCGCCAgcaggUCGGCc -3'
miRNA:   3'- -AGAcCAUgUUUGcGUUGCGGU-----GGCCG- -5'
14309 5' -53 NC_003521.1 + 32205 0.66 0.994618
Target:  5'- -aUGGUGgGGAuggcuCGCAACGCgGCCcagacGGCc -3'
miRNA:   3'- agACCAUgUUU-----GCGUUGCGgUGG-----CCG- -5'
14309 5' -53 NC_003521.1 + 87264 0.66 0.994618
Target:  5'- gCU-GUGCGccguGCGCGugGCCaACgGGCc -3'
miRNA:   3'- aGAcCAUGUu---UGCGUugCGG-UGgCCG- -5'
14309 5' -53 NC_003521.1 + 56458 0.66 0.994618
Target:  5'- --aGGUcCGAgagGCGCcGCGCCA-CGGCc -3'
miRNA:   3'- agaCCAuGUU---UGCGuUGCGGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 77695 0.66 0.994618
Target:  5'- gCUGGcgaagACAgccGugGCGGCGUUGuuGGCg -3'
miRNA:   3'- aGACCa----UGU---UugCGUUGCGGUggCCG- -5'
14309 5' -53 NC_003521.1 + 38467 0.66 0.994618
Target:  5'- gUCUGGgcuCuGGCG-GugGgCGCCGGCg -3'
miRNA:   3'- -AGACCau-GuUUGCgUugCgGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 225537 0.66 0.994618
Target:  5'- gUCg---ACGAACGCu-CGUCACCaGGCa -3'
miRNA:   3'- -AGaccaUGUUUGCGuuGCGGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 111842 0.66 0.994618
Target:  5'- -gUGGUgcccaGCAucgucuuuuuccAGCGCcACGCCGCCaGCc -3'
miRNA:   3'- agACCA-----UGU------------UUGCGuUGCGGUGGcCG- -5'
14309 5' -53 NC_003521.1 + 103773 0.66 0.994618
Target:  5'- --gGGgcCGGGCGguGCcugagucaGCCGCCGGUu -3'
miRNA:   3'- agaCCauGUUUGCguUG--------CGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 126965 0.66 0.994618
Target:  5'- --cGGaACccGCGCcguCGUCGCCGGCc -3'
miRNA:   3'- agaCCaUGuuUGCGuu-GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 74493 0.66 0.994618
Target:  5'- gCUGGUGC---CGCccuucuacuucAACGCCcuGCUGGCc -3'
miRNA:   3'- aGACCAUGuuuGCG-----------UUGCGG--UGGCCG- -5'
14309 5' -53 NC_003521.1 + 145984 0.66 0.994618
Target:  5'- gCUGGc----GCGCuuccCGCUGCCGGCu -3'
miRNA:   3'- aGACCauguuUGCGuu--GCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 89939 0.66 0.994618
Target:  5'- aUCUGGUgGCGGAUgaaaaaGCcGCGUCuCUGGCg -3'
miRNA:   3'- -AGACCA-UGUUUG------CGuUGCGGuGGCCG- -5'
14309 5' -53 NC_003521.1 + 212846 0.66 0.994618
Target:  5'- gCUGccGCcGugGCcgugAGCGCCGCCuGGCg -3'
miRNA:   3'- aGACcaUGuUugCG----UUGCGGUGG-CCG- -5'
14309 5' -53 NC_003521.1 + 95218 0.66 0.994618
Target:  5'- --gGGUGCGAcUGCAGCagcgaggccacgGCCGCCGcGUc -3'
miRNA:   3'- agaCCAUGUUuGCGUUG------------CGGUGGC-CG- -5'
14309 5' -53 NC_003521.1 + 45806 0.66 0.994618
Target:  5'- uUCUaGGgGgAGGCG-AAgGCCACUGGCa -3'
miRNA:   3'- -AGA-CCaUgUUUGCgUUgCGGUGGCCG- -5'
14309 5' -53 NC_003521.1 + 163198 0.66 0.994618
Target:  5'- --cGGUG--GugGCGGCGgCAgCGGCa -3'
miRNA:   3'- agaCCAUguUugCGUUGCgGUgGCCG- -5'
14309 5' -53 NC_003521.1 + 223370 0.66 0.994618
Target:  5'- cUUGGUcagcaGCGAcauCGCGGCGCCccgacGCgGGCc -3'
miRNA:   3'- aGACCA-----UGUUu--GCGUUGCGG-----UGgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.