miRNA display CGI


Results 1 - 20 of 164 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14311 5' -53.6 NC_003521.1 + 226220 0.66 0.987621
Target:  5'- aUCAGCCgcauaaUCACCGUGCcguaGCCcGGCg -3'
miRNA:   3'- aAGUUGG------AGUGGCACGac--CGGuUUGg -5'
14311 5' -53.6 NC_003521.1 + 97396 0.66 0.987621
Target:  5'- --aGACCUCGCCGaaggagccCUGGcCCAGGCg -3'
miRNA:   3'- aagUUGGAGUGGCac------GACC-GGUUUGg -5'
14311 5' -53.6 NC_003521.1 + 46859 0.66 0.987621
Target:  5'- cUUCAugACCUCGCCGUcGUgGGuCCAGAa- -3'
miRNA:   3'- -AAGU--UGGAGUGGCA-CGaCC-GGUUUgg -5'
14311 5' -53.6 NC_003521.1 + 20580 0.66 0.987621
Target:  5'- gUgAugUUCAUCuaccUGCUGGCCAAcaGCCu -3'
miRNA:   3'- aAgUugGAGUGGc---ACGACCGGUU--UGG- -5'
14311 5' -53.6 NC_003521.1 + 66652 0.66 0.987621
Target:  5'- gUCGACCU--UCGUGCgcGGCCugcAGGCCc -3'
miRNA:   3'- aAGUUGGAguGGCACGa-CCGG---UUUGG- -5'
14311 5' -53.6 NC_003521.1 + 95147 0.66 0.986689
Target:  5'- -gCGGCCgCGCCGacggcaaggagucgGCcGGCCGGGCCc -3'
miRNA:   3'- aaGUUGGaGUGGCa-------------CGaCCGGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 107196 0.66 0.986038
Target:  5'- -gCAGCUUCuugagGCUGGCCAuGCCc -3'
miRNA:   3'- aaGUUGGAGuggcaCGACCGGUuUGG- -5'
14311 5' -53.6 NC_003521.1 + 53957 0.66 0.986038
Target:  5'- cUgGGCCgacgaGCCGUGCUGcacgccgccGCUggGCCg -3'
miRNA:   3'- aAgUUGGag---UGGCACGAC---------CGGuuUGG- -5'
14311 5' -53.6 NC_003521.1 + 105873 0.66 0.986038
Target:  5'- aUCAGCCUCaACUcgcagGUGCgcaagacGGCCAAcauguucauGCCg -3'
miRNA:   3'- aAGUUGGAG-UGG-----CACGa------CCGGUU---------UGG- -5'
14311 5' -53.6 NC_003521.1 + 21334 0.66 0.986038
Target:  5'- --uGACCgUCACCGUGCUGcUCAGcgcGCUg -3'
miRNA:   3'- aagUUGG-AGUGGCACGACcGGUU---UGG- -5'
14311 5' -53.6 NC_003521.1 + 12383 0.66 0.986038
Target:  5'- -cCGGCCUCuuucacGCCGaguucgugcUGCUGGCUG-ACCg -3'
miRNA:   3'- aaGUUGGAG------UGGC---------ACGACCGGUuUGG- -5'
14311 5' -53.6 NC_003521.1 + 107448 0.66 0.986038
Target:  5'- --gGACCgccgCGCUGUGCcGG-CGGACCg -3'
miRNA:   3'- aagUUGGa---GUGGCACGaCCgGUUUGG- -5'
14311 5' -53.6 NC_003521.1 + 4357 0.66 0.986038
Target:  5'- --gGACCgguUCGCCGcuUGC-GGCCGAGCa -3'
miRNA:   3'- aagUUGG---AGUGGC--ACGaCCGGUUUGg -5'
14311 5' -53.6 NC_003521.1 + 12254 0.66 0.985534
Target:  5'- -aCAACCUCAagggCGU-CUGGCCGuucaucugcauggaGACCc -3'
miRNA:   3'- aaGUUGGAGUg---GCAcGACCGGU--------------UUGG- -5'
14311 5' -53.6 NC_003521.1 + 162809 0.66 0.984305
Target:  5'- gUCAugcAUCUCACCaaggGCUGGCUcugcgcGACCa -3'
miRNA:   3'- aAGU---UGGAGUGGca--CGACCGGu-----UUGG- -5'
14311 5' -53.6 NC_003521.1 + 119719 0.66 0.984305
Target:  5'- -cCAGCCUCAgCGggaUGGCCccGGCCc -3'
miRNA:   3'- aaGUUGGAGUgGCacgACCGGu-UUGG- -5'
14311 5' -53.6 NC_003521.1 + 148431 0.66 0.984305
Target:  5'- -gCGGCCgCGCCGgcgGCuccaggggUGGCCGGugCg -3'
miRNA:   3'- aaGUUGGaGUGGCa--CG--------ACCGGUUugG- -5'
14311 5' -53.6 NC_003521.1 + 150258 0.66 0.984305
Target:  5'- gUCGGCCUgCACCGcgGCcGGCCu--CUc -3'
miRNA:   3'- aAGUUGGA-GUGGCa-CGaCCGGuuuGG- -5'
14311 5' -53.6 NC_003521.1 + 103337 0.66 0.984305
Target:  5'- ---cGCCagCGCCGUGCgguaGGCCAggUa -3'
miRNA:   3'- aaguUGGa-GUGGCACGa---CCGGUuuGg -5'
14311 5' -53.6 NC_003521.1 + 152944 0.66 0.984305
Target:  5'- aUCcACUUCGCCaacgGcCUGGCCAGcGCCu -3'
miRNA:   3'- aAGuUGGAGUGGca--C-GACCGGUU-UGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.