miRNA display CGI


Results 1 - 20 of 291 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14316 3' -56.3 NC_003521.1 + 155513 0.66 0.946788
Target:  5'- cAAGGcuGGAGCGACGGCGACG-UGGUu- -3'
miRNA:   3'- -UUCU--CCUCGCUGCUGUUGCcGUCGug -5'
14316 3' -56.3 NC_003521.1 + 214814 0.66 0.946788
Target:  5'- -cGGGcgccGGGCG-CGGCGACGGCGGUu- -3'
miRNA:   3'- uuCUC----CUCGCuGCUGUUGCCGUCGug -5'
14316 3' -56.3 NC_003521.1 + 145554 0.66 0.946788
Target:  5'- aAGGAGGAccccuucguGCaGaACGuGCuGCGGCGGCACg -3'
miRNA:   3'- -UUCUCCU---------CG-C-UGC-UGuUGCCGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 29395 0.66 0.946788
Target:  5'- -cGAGGAG-GACGACGACgaGGaCAGUcCg -3'
miRNA:   3'- uuCUCCUCgCUGCUGUUG--CC-GUCGuG- -5'
14316 3' -56.3 NC_003521.1 + 48290 0.66 0.94636
Target:  5'- aGAGAGGA-CGACGACAcgucuucgACGucgucagauucgaGCAGUACc -3'
miRNA:   3'- -UUCUCCUcGCUGCUGU--------UGC-------------CGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 139268 0.66 0.942404
Target:  5'- -cGGGGGGaCGACGACGccgucgucgucuACGagacggagcuGCAGCGCc -3'
miRNA:   3'- uuCUCCUC-GCUGCUGU------------UGC----------CGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 15048 0.66 0.942404
Target:  5'- -uGAcGAGCGGCG-CGagcGCGaGCGGCGCg -3'
miRNA:   3'- uuCUcCUCGCUGCuGU---UGC-CGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 87566 0.66 0.942404
Target:  5'- uGGAGaAGC-ACGACcGCGGUAGCGa -3'
miRNA:   3'- uUCUCcUCGcUGCUGuUGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 186616 0.66 0.942404
Target:  5'- cAAGGGcuacGCGGCGGCggUGGUGGCGg -3'
miRNA:   3'- -UUCUCcu--CGCUGCUGuuGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 224164 0.66 0.942404
Target:  5'- cAGGAGGAGCGGuggGACuuuGCaGaGCAGCAg -3'
miRNA:   3'- -UUCUCCUCGCUg--CUGu--UG-C-CGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 50796 0.66 0.942404
Target:  5'- -cGAucGGCGACGGUGAUGGCAGCGg -3'
miRNA:   3'- uuCUccUCGCUGCUGUUGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 125255 0.66 0.942404
Target:  5'- --cGGGGGCGA-GAuCAACGuccgcGCAGCACg -3'
miRNA:   3'- uucUCCUCGCUgCU-GUUGC-----CGUCGUG- -5'
14316 3' -56.3 NC_003521.1 + 129281 0.66 0.942404
Target:  5'- -cGAGGuagaGGCGcCGGCGguacuuuuugaGCGGCGGCGg -3'
miRNA:   3'- uuCUCC----UCGCuGCUGU-----------UGCCGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 160447 0.66 0.942404
Target:  5'- --aAGGcGCGACGGC-ACGGCAGa-- -3'
miRNA:   3'- uucUCCuCGCUGCUGuUGCCGUCgug -5'
14316 3' -56.3 NC_003521.1 + 103471 0.66 0.942404
Target:  5'- ---cGGcguaGGCGACGAacuGCGGCAcGCGCu -3'
miRNA:   3'- uucuCC----UCGCUGCUgu-UGCCGU-CGUG- -5'
14316 3' -56.3 NC_003521.1 + 190983 0.66 0.941045
Target:  5'- -cGAGGccgAGCGGCagcaggcgcaggugGACGugGGCAGCc- -3'
miRNA:   3'- uuCUCC---UCGCUG--------------CUGUugCCGUCGug -5'
14316 3' -56.3 NC_003521.1 + 5922 0.66 0.939664
Target:  5'- -cGAGGGGCuACGAUGACGGUuccgacgaaacauccAGCGu -3'
miRNA:   3'- uuCUCCUCGcUGCUGUUGCCG---------------UCGUg -5'
14316 3' -56.3 NC_003521.1 + 75022 0.66 0.937792
Target:  5'- --cAGGAccccuacuGCGACGGCAGCGcCAGCGg -3'
miRNA:   3'- uucUCCU--------CGCUGCUGUUGCcGUCGUg -5'
14316 3' -56.3 NC_003521.1 + 116261 0.66 0.937792
Target:  5'- uAGAGGAGgaaaCGACGGCAACGaUGGCu- -3'
miRNA:   3'- uUCUCCUC----GCUGCUGUUGCcGUCGug -5'
14316 3' -56.3 NC_003521.1 + 168357 0.66 0.937792
Target:  5'- -cGAaGAGCGGCG-CGuaGCGGCAGUcgGCg -3'
miRNA:   3'- uuCUcCUCGCUGCuGU--UGCCGUCG--UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.