miRNA display CGI


Results 1 - 20 of 284 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14316 5' -59.3 NC_003521.1 + 52306 0.66 0.894532
Target:  5'- aCGugGGgcCCGCcggccuccucguaucUcGGCGGCGgacccagGCCCACg -3'
miRNA:   3'- -GCugCUauGGCG---------------A-CCGCCGC-------UGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 19944 0.66 0.893282
Target:  5'- gGGCGAgaucguggugaggugGCCggGCUGGCGGUGAUCg-- -3'
miRNA:   3'- gCUGCUa--------------UGG--CGACCGCCGCUGGgug -5'
14316 5' -59.3 NC_003521.1 + 17356 0.66 0.892654
Target:  5'- gGGCcGUGaCGCcgGcGCGGCGGCCCAg -3'
miRNA:   3'- gCUGcUAUgGCGa-C-CGCCGCUGGGUg -5'
14316 5' -59.3 NC_003521.1 + 143992 0.66 0.892654
Target:  5'- uGcCGcUGCagaaGCUGGUGGUGugcaACCCACa -3'
miRNA:   3'- gCuGCuAUGg---CGACCGCCGC----UGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 78836 0.66 0.892654
Target:  5'- -aACGGUuacggagcaccaGCCGaaGGUGGUGAUCCGCc -3'
miRNA:   3'- gcUGCUA------------UGGCgaCCGCCGCUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 96121 0.66 0.892654
Target:  5'- aGACGccccacaugAUgGC-GGCGGCGuCCCGCu -3'
miRNA:   3'- gCUGCua-------UGgCGaCCGCCGCuGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 83963 0.66 0.892654
Target:  5'- uGA-GGUGCuCGg-GGuCGGUGACCCGCg -3'
miRNA:   3'- gCUgCUAUG-GCgaCC-GCCGCUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 89619 0.66 0.892654
Target:  5'- -cGCGGUcACCG-UGGUGGUGACCguCg -3'
miRNA:   3'- gcUGCUA-UGGCgACCGCCGCUGGguG- -5'
14316 5' -59.3 NC_003521.1 + 123459 0.66 0.892654
Target:  5'- -aGCGGggACCGCgGGuUGGCGACUgGCc -3'
miRNA:   3'- gcUGCUa-UGGCGaCC-GCCGCUGGgUG- -5'
14316 5' -59.3 NC_003521.1 + 46442 0.66 0.892654
Target:  5'- cCGGCGggGCUGCgggGGCuGGuCGGCCUc- -3'
miRNA:   3'- -GCUGCuaUGGCGa--CCG-CC-GCUGGGug -5'
14316 5' -59.3 NC_003521.1 + 234088 0.66 0.892654
Target:  5'- uCGGCGAg--CGCUGGCuGCGucagGCCCuGCa -3'
miRNA:   3'- -GCUGCUaugGCGACCGcCGC----UGGG-UG- -5'
14316 5' -59.3 NC_003521.1 + 234778 0.66 0.892654
Target:  5'- -uGCGggGCCGCUGG-GGCacGGCUUACu -3'
miRNA:   3'- gcUGCuaUGGCGACCgCCG--CUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 86279 0.66 0.892654
Target:  5'- gCGGCGAUcACCGUggUGcCGGUGAUCaCGCa -3'
miRNA:   3'- -GCUGCUA-UGGCG--ACcGCCGCUGG-GUG- -5'
14316 5' -59.3 NC_003521.1 + 166798 0.66 0.892654
Target:  5'- gGACGAUgccgccGCCGCUGcugcuGCGaCGAUCCAg -3'
miRNA:   3'- gCUGCUA------UGGCGAC-----CGCcGCUGGGUg -5'
14316 5' -59.3 NC_003521.1 + 38702 0.66 0.892654
Target:  5'- uGAUGAUACuCGCgGGCguccuGGUGGCgCUACu -3'
miRNA:   3'- gCUGCUAUG-GCGaCCG-----CCGCUG-GGUG- -5'
14316 5' -59.3 NC_003521.1 + 168427 0.66 0.892654
Target:  5'- gGGCGGcaggGCCGC-GGCGGCGGgCg-- -3'
miRNA:   3'- gCUGCUa---UGGCGaCCGCCGCUgGgug -5'
14316 5' -59.3 NC_003521.1 + 110928 0.66 0.892654
Target:  5'- cCGcACGGUGCCGUUGGUgcacugGGUGuuguuCUCGCg -3'
miRNA:   3'- -GC-UGCUAUGGCGACCG------CCGCu----GGGUG- -5'
14316 5' -59.3 NC_003521.1 + 94390 0.66 0.890121
Target:  5'- uGugGGgcauguuaucguaGCCGCgcagguugacGCGGCGGCCCAUg -3'
miRNA:   3'- gCugCUa------------UGGCGac--------CGCCGCUGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 187403 0.66 0.886261
Target:  5'- aGACcuuccGCUGCUcGGUGGCGcccgacGCCCGCa -3'
miRNA:   3'- gCUGcua--UGGCGA-CCGCCGC------UGGGUG- -5'
14316 5' -59.3 NC_003521.1 + 183913 0.66 0.886261
Target:  5'- aGGCGGUGCUGC-GGCGcugucGCGACggCCAg -3'
miRNA:   3'- gCUGCUAUGGCGaCCGC-----CGCUG--GGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.