miRNA display CGI


Results 1 - 20 of 234 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14340 3' -60.9 NC_003521.1 + 57100 0.66 0.831664
Target:  5'- uGGCcGGGUaGaGGccCCAGCaGCCGGCCa -3'
miRNA:   3'- -UCGuCUCG-C-CCuaGGUCGcUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 128480 0.66 0.831664
Target:  5'- gGGCAGcGGCGuGAggcUguGCGcGCCGGCCu -3'
miRNA:   3'- -UCGUC-UCGCcCUa--GguCGC-UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 100843 0.66 0.831664
Target:  5'- cGCAGGGuCGGuGAga-GGCu-CCGGCCg -3'
miRNA:   3'- uCGUCUC-GCC-CUaggUCGcuGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 163207 0.66 0.831664
Target:  5'- cGGCGGcAGCGGcaguagcUCCGGCGGCCuGGg- -3'
miRNA:   3'- -UCGUC-UCGCCcu-----AGGUCGCUGG-CCgg -5'
14340 3' -60.9 NC_003521.1 + 103600 0.66 0.831664
Target:  5'- cGguGcGCGGGGgaUCUgaaagaagGGCGucCCGGCCg -3'
miRNA:   3'- uCguCuCGCCCU--AGG--------UCGCu-GGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 192052 0.66 0.829306
Target:  5'- cGGCAGAcGCGGcGUCC-GCGGCgguuugugaggcguCGGCUu -3'
miRNA:   3'- -UCGUCU-CGCCcUAGGuCGCUG--------------GCCGG- -5'
14340 3' -60.9 NC_003521.1 + 153434 0.66 0.826935
Target:  5'- cAGCAGcAGCcGGucgcgcucguaggCCAGCGGCUcgcaGGCCa -3'
miRNA:   3'- -UCGUC-UCGcCCua-----------GGUCGCUGG----CCGG- -5'
14340 3' -60.9 NC_003521.1 + 129558 0.66 0.824549
Target:  5'- uGGCAcGGCGGGcccgacgauggcugcUCCGccGCGccgcGCCGGCCg -3'
miRNA:   3'- -UCGUcUCGCCCu--------------AGGU--CGC----UGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 123537 0.66 0.823751
Target:  5'- cAGCGuGAG-GGGAgCCGGC-ACCacGGCCg -3'
miRNA:   3'- -UCGU-CUCgCCCUaGGUCGcUGG--CCGG- -5'
14340 3' -60.9 NC_003521.1 + 19541 0.66 0.823751
Target:  5'- uGCAGAGCcuGAUCCugaugagcGUGugCGGCUu -3'
miRNA:   3'- uCGUCUCGccCUAGGu-------CGCugGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 25645 0.66 0.823751
Target:  5'- uAGCGGAGCauaccguguguGGcGAacUCCAGCaGGuugUCGGCCa -3'
miRNA:   3'- -UCGUCUCG-----------CC-CU--AGGUCG-CU---GGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 113528 0.66 0.823751
Target:  5'- cGCAGcGGCuGGGAUCCcucGCG-CCGGg- -3'
miRNA:   3'- uCGUC-UCG-CCCUAGGu--CGCuGGCCgg -5'
14340 3' -60.9 NC_003521.1 + 4124 0.66 0.823751
Target:  5'- -aUAGGGUGGGAUacgggAGCgGGCCGGCg -3'
miRNA:   3'- ucGUCUCGCCCUAgg---UCG-CUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 181013 0.66 0.823751
Target:  5'- gAGCAGcacGCGG--UCCAGCG-CCGuGUCg -3'
miRNA:   3'- -UCGUCu--CGCCcuAGGUCGCuGGC-CGG- -5'
14340 3' -60.9 NC_003521.1 + 236453 0.66 0.823751
Target:  5'- gAGC-GAGCGGGAcgcgggCCgcgaugAGCGaaccGCCGGCg -3'
miRNA:   3'- -UCGuCUCGCCCUa-----GG------UCGC----UGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 98545 0.66 0.823751
Target:  5'- cAGCGGcGGCGGGucCCAGC--CCGaGCCc -3'
miRNA:   3'- -UCGUC-UCGCCCuaGGUCGcuGGC-CGG- -5'
14340 3' -60.9 NC_003521.1 + 46402 0.66 0.823751
Target:  5'- cGUGGGGCGcgcgggccaGGAagCGGCGACgGGCg -3'
miRNA:   3'- uCGUCUCGC---------CCUagGUCGCUGgCCGg -5'
14340 3' -60.9 NC_003521.1 + 109668 0.66 0.823751
Target:  5'- uGCAGAcguaGCGGcGGau--GCGAUCGGCCg -3'
miRNA:   3'- uCGUCU----CGCC-CUagguCGCUGGCCGG- -5'
14340 3' -60.9 NC_003521.1 + 210262 0.66 0.823751
Target:  5'- cGCGGA-CGGGccUUCuGUGGCCGGCg -3'
miRNA:   3'- uCGUCUcGCCCu-AGGuCGCUGGCCGg -5'
14340 3' -60.9 NC_003521.1 + 168998 0.66 0.823751
Target:  5'- cGCGGgaGGCGGGcgaCGG-GGCCGGCa -3'
miRNA:   3'- uCGUC--UCGCCCuagGUCgCUGGCCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.