Results 1 - 20 of 234 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14340 | 3' | -60.9 | NC_003521.1 | + | 57100 | 0.66 | 0.831664 |
Target: 5'- uGGCcGGGUaGaGGccCCAGCaGCCGGCCa -3' miRNA: 3'- -UCGuCUCG-C-CCuaGGUCGcUGGCCGG- -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 128480 | 0.66 | 0.831664 |
Target: 5'- gGGCAGcGGCGuGAggcUguGCGcGCCGGCCu -3' miRNA: 3'- -UCGUC-UCGCcCUa--GguCGC-UGGCCGG- -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 100843 | 0.66 | 0.831664 |
Target: 5'- cGCAGGGuCGGuGAga-GGCu-CCGGCCg -3' miRNA: 3'- uCGUCUC-GCC-CUaggUCGcuGGCCGG- -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 163207 | 0.66 | 0.831664 |
Target: 5'- cGGCGGcAGCGGcaguagcUCCGGCGGCCuGGg- -3' miRNA: 3'- -UCGUC-UCGCCcu-----AGGUCGCUGG-CCgg -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 103600 | 0.66 | 0.831664 |
Target: 5'- cGguGcGCGGGGgaUCUgaaagaagGGCGucCCGGCCg -3' miRNA: 3'- uCguCuCGCCCU--AGG--------UCGCu-GGCCGG- -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 192052 | 0.66 | 0.829306 |
Target: 5'- cGGCAGAcGCGGcGUCC-GCGGCgguuugugaggcguCGGCUu -3' miRNA: 3'- -UCGUCU-CGCCcUAGGuCGCUG--------------GCCGG- -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 153434 | 0.66 | 0.826935 |
Target: 5'- cAGCAGcAGCcGGucgcgcucguaggCCAGCGGCUcgcaGGCCa -3' miRNA: 3'- -UCGUC-UCGcCCua-----------GGUCGCUGG----CCGG- -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 129558 | 0.66 | 0.824549 |
Target: 5'- uGGCAcGGCGGGcccgacgauggcugcUCCGccGCGccgcGCCGGCCg -3' miRNA: 3'- -UCGUcUCGCCCu--------------AGGU--CGC----UGGCCGG- -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 123537 | 0.66 | 0.823751 |
Target: 5'- cAGCGuGAG-GGGAgCCGGC-ACCacGGCCg -3' miRNA: 3'- -UCGU-CUCgCCCUaGGUCGcUGG--CCGG- -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 19541 | 0.66 | 0.823751 |
Target: 5'- uGCAGAGCcuGAUCCugaugagcGUGugCGGCUu -3' miRNA: 3'- uCGUCUCGccCUAGGu-------CGCugGCCGG- -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 25645 | 0.66 | 0.823751 |
Target: 5'- uAGCGGAGCauaccguguguGGcGAacUCCAGCaGGuugUCGGCCa -3' miRNA: 3'- -UCGUCUCG-----------CC-CU--AGGUCG-CU---GGCCGG- -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 113528 | 0.66 | 0.823751 |
Target: 5'- cGCAGcGGCuGGGAUCCcucGCG-CCGGg- -3' miRNA: 3'- uCGUC-UCG-CCCUAGGu--CGCuGGCCgg -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 4124 | 0.66 | 0.823751 |
Target: 5'- -aUAGGGUGGGAUacgggAGCgGGCCGGCg -3' miRNA: 3'- ucGUCUCGCCCUAgg---UCG-CUGGCCGg -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 181013 | 0.66 | 0.823751 |
Target: 5'- gAGCAGcacGCGG--UCCAGCG-CCGuGUCg -3' miRNA: 3'- -UCGUCu--CGCCcuAGGUCGCuGGC-CGG- -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 236453 | 0.66 | 0.823751 |
Target: 5'- gAGC-GAGCGGGAcgcgggCCgcgaugAGCGaaccGCCGGCg -3' miRNA: 3'- -UCGuCUCGCCCUa-----GG------UCGC----UGGCCGg -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 98545 | 0.66 | 0.823751 |
Target: 5'- cAGCGGcGGCGGGucCCAGC--CCGaGCCc -3' miRNA: 3'- -UCGUC-UCGCCCuaGGUCGcuGGC-CGG- -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 46402 | 0.66 | 0.823751 |
Target: 5'- cGUGGGGCGcgcgggccaGGAagCGGCGACgGGCg -3' miRNA: 3'- uCGUCUCGC---------CCUagGUCGCUGgCCGg -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 109668 | 0.66 | 0.823751 |
Target: 5'- uGCAGAcguaGCGGcGGau--GCGAUCGGCCg -3' miRNA: 3'- uCGUCU----CGCC-CUagguCGCUGGCCGG- -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 210262 | 0.66 | 0.823751 |
Target: 5'- cGCGGA-CGGGccUUCuGUGGCCGGCg -3' miRNA: 3'- uCGUCUcGCCCu-AGGuCGCUGGCCGg -5' |
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14340 | 3' | -60.9 | NC_003521.1 | + | 168998 | 0.66 | 0.823751 |
Target: 5'- cGCGGgaGGCGGGcgaCGG-GGCCGGCa -3' miRNA: 3'- uCGUC--UCGCCCuagGUCgCUGGCCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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