Results 1 - 20 of 86 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14340 | 5' | -57.9 | NC_003521.1 | + | 117257 | 0.66 | 0.904728 |
Target: 5'- -cGGCGCUGCAcgacugccuggcGCUGcAC-CUGCCCGa -3' miRNA: 3'- caUUGCGACGU------------CGACcUGaGGCGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 149619 | 0.66 | 0.904728 |
Target: 5'- --uGCGCgaaacgGC-GCUGGACgCCGCCg- -3' miRNA: 3'- cauUGCGa-----CGuCGACCUGaGGCGGgu -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 18798 | 0.66 | 0.904728 |
Target: 5'- -cAGCGCUGCuuucGCgUGGccaaguGCUucCCGCCCAc -3' miRNA: 3'- caUUGCGACGu---CG-ACC------UGA--GGCGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 59488 | 0.66 | 0.904728 |
Target: 5'- --cACGCUGCAGCUacagaaccaGACggCGCCCu -3' miRNA: 3'- cauUGCGACGUCGAc--------CUGagGCGGGu -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 97992 | 0.66 | 0.904728 |
Target: 5'- -gGACGCUGguGUUGGuGCcgaugCCgaaGCCCAg -3' miRNA: 3'- caUUGCGACguCGACC-UGa----GG---CGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 141985 | 0.66 | 0.898564 |
Target: 5'- ----aGCUGCAGCgGGAgCUggcCCGCgCCAa -3' miRNA: 3'- cauugCGACGUCGaCCU-GA---GGCG-GGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 18923 | 0.66 | 0.898564 |
Target: 5'- gGUGGCGCcGCGcGCcGGcaaUCCGCCCc -3' miRNA: 3'- -CAUUGCGaCGU-CGaCCug-AGGCGGGu -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 110678 | 0.66 | 0.898564 |
Target: 5'- cGUAGCGCUcgguggcgGCAGCgGcGGCgCCGCCg- -3' miRNA: 3'- -CAUUGCGA--------CGUCGaC-CUGaGGCGGgu -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 28776 | 0.66 | 0.892182 |
Target: 5'- cUAGCGCUGCAcuuuCUGcGCUCCgacaaGCCCGu -3' miRNA: 3'- cAUUGCGACGUc---GACcUGAGG-----CGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 98522 | 0.66 | 0.892181 |
Target: 5'- -cGACGCgcGCGGCUGGGCcgCUGCa-- -3' miRNA: 3'- caUUGCGa-CGUCGACCUGa-GGCGggu -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 72196 | 0.66 | 0.892181 |
Target: 5'- cGUGGCGCaGCAGCaacagcagaUGG-CgcaCGCCCAg -3' miRNA: 3'- -CAUUGCGaCGUCG---------ACCuGag-GCGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 162460 | 0.66 | 0.892181 |
Target: 5'- aGUAcgaGCUGCuGCUGGGCUUCauGCUCu -3' miRNA: 3'- -CAUug-CGACGuCGACCUGAGG--CGGGu -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 80310 | 0.66 | 0.885584 |
Target: 5'- gGUGACGgUGguGCUGGAgCUgCGCg-- -3' miRNA: 3'- -CAUUGCgACguCGACCU-GAgGCGggu -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 47397 | 0.66 | 0.878775 |
Target: 5'- -gGGCGCUGCgcgagcggAGCUGGAUguagcaUCGCUCGg -3' miRNA: 3'- caUUGCGACG--------UCGACCUGa-----GGCGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 33033 | 0.66 | 0.878775 |
Target: 5'- -cAGCGCcgugccauagaGCAGCacgUGGAUgCCGCCCAg -3' miRNA: 3'- caUUGCGa----------CGUCG---ACCUGaGGCGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 165883 | 0.66 | 0.878775 |
Target: 5'- -aAGgGCagGCAGaUGGACUCCuuGCCCGu -3' miRNA: 3'- caUUgCGa-CGUCgACCUGAGG--CGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 7798 | 0.66 | 0.877388 |
Target: 5'- -cAGCGCUcgaagcgGCAGCUGGACggcgucaaggccaUCCgGCgCCAg -3' miRNA: 3'- caUUGCGA-------CGUCGACCUG-------------AGG-CG-GGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 181289 | 0.67 | 0.87459 |
Target: 5'- ----aGCUGCAGCcgGGAagagaagcucaggCCGCCCGc -3' miRNA: 3'- cauugCGACGUCGa-CCUga-----------GGCGGGU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 113526 | 0.67 | 0.871758 |
Target: 5'- --uGCGCaGCGGCUGGGauccCUCgCGCCgGg -3' miRNA: 3'- cauUGCGaCGUCGACCU----GAG-GCGGgU- -5' |
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14340 | 5' | -57.9 | NC_003521.1 | + | 222601 | 0.67 | 0.871758 |
Target: 5'- -aAACGC-GCAGCUcgcGGaACUCCGCggCCGa -3' miRNA: 3'- caUUGCGaCGUCGA---CC-UGAGGCG--GGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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