miRNA display CGI


Results 1 - 20 of 338 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14371 5' -62 NC_003521.1 + 22744 0.66 0.822238
Target:  5'- aCCggCGCCGCCGCCuCGCuguGCuUCGAg -3'
miRNA:   3'- -GGagGCGGUGGCGGcGCGc--UGcAGCU- -5'
14371 5' -62 NC_003521.1 + 123594 0.66 0.822238
Target:  5'- gCCgggagCCGCCGCgGCCGUcaGCGG-GUgCGAc -3'
miRNA:   3'- -GGa----GGCGGUGgCGGCG--CGCUgCA-GCU- -5'
14371 5' -62 NC_003521.1 + 121351 0.66 0.822238
Target:  5'- aCC-CUGCaCGCC-CCGCGCGGCuUCa- -3'
miRNA:   3'- -GGaGGCG-GUGGcGGCGCGCUGcAGcu -5'
14371 5' -62 NC_003521.1 + 226384 0.66 0.822238
Target:  5'- aCgCCGCCGCaggGCCGUGUGcaccACGUCa- -3'
miRNA:   3'- gGaGGCGGUGg--CGGCGCGC----UGCAGcu -5'
14371 5' -62 NC_003521.1 + 109732 0.66 0.822238
Target:  5'- gCC-CCGCCGuCCGgagcCCGCGCGAgcCG-CGGu -3'
miRNA:   3'- -GGaGGCGGU-GGC----GGCGCGCU--GCaGCU- -5'
14371 5' -62 NC_003521.1 + 140759 0.66 0.822238
Target:  5'- --cCCGCCuCCguGCCGgGCGAUGaCGAc -3'
miRNA:   3'- ggaGGCGGuGG--CGGCgCGCUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 190039 0.66 0.822238
Target:  5'- aCCgUCGCCgaucgaccaggACCGCCGCGCGgucuucACGUaCGu -3'
miRNA:   3'- -GGaGGCGG-----------UGGCGGCGCGC------UGCA-GCu -5'
14371 5' -62 NC_003521.1 + 222052 0.66 0.822238
Target:  5'- --cCCuCCACCGCCuGCGUGGucuCGUCGu -3'
miRNA:   3'- ggaGGcGGUGGCGG-CGCGCU---GCAGCu -5'
14371 5' -62 NC_003521.1 + 141627 0.66 0.822238
Target:  5'- aCUgCGCCGCgGCCGUcacCGACGU-GAc -3'
miRNA:   3'- gGAgGCGGUGgCGGCGc--GCUGCAgCU- -5'
14371 5' -62 NC_003521.1 + 123628 0.66 0.822238
Target:  5'- aUCUCCaCCGCC-UCGgGCGGCGgcagCGAc -3'
miRNA:   3'- -GGAGGcGGUGGcGGCgCGCUGCa---GCU- -5'
14371 5' -62 NC_003521.1 + 206348 0.66 0.822238
Target:  5'- gCUUCCGCgaGCUGCUGgccUGCGGCGaCGAc -3'
miRNA:   3'- -GGAGGCGg-UGGCGGC---GCGCUGCaGCU- -5'
14371 5' -62 NC_003521.1 + 181383 0.66 0.81435
Target:  5'- aCCUCgaGCuCGCUGCCG-GCGGCGgCGc -3'
miRNA:   3'- -GGAGg-CG-GUGGCGGCgCGCUGCaGCu -5'
14371 5' -62 NC_003521.1 + 222092 0.66 0.81435
Target:  5'- aCCgCCGCCacgaucGCCGCCGCcaGCGGCa---- -3'
miRNA:   3'- -GGaGGCGG------UGGCGGCG--CGCUGcagcu -5'
14371 5' -62 NC_003521.1 + 198261 0.66 0.81435
Target:  5'- aCUCgGCCGCCggacagccaGCCGgGCGuCG-CGGa -3'
miRNA:   3'- gGAGgCGGUGG---------CGGCgCGCuGCaGCU- -5'
14371 5' -62 NC_003521.1 + 222349 0.66 0.81435
Target:  5'- uCCUCCagGCgaCACuCGCCGCGCaGCccgcgGUCGAa -3'
miRNA:   3'- -GGAGG--CG--GUG-GCGGCGCGcUG-----CAGCU- -5'
14371 5' -62 NC_003521.1 + 136637 0.66 0.81435
Target:  5'- -aUCgGCCACgGgCGCGgGGCGgcggCGAc -3'
miRNA:   3'- ggAGgCGGUGgCgGCGCgCUGCa---GCU- -5'
14371 5' -62 NC_003521.1 + 156615 0.66 0.81435
Target:  5'- cUCUCgCGCCuGgUGCUGCGCGACGcCc- -3'
miRNA:   3'- -GGAG-GCGG-UgGCGGCGCGCUGCaGcu -5'
14371 5' -62 NC_003521.1 + 133494 0.66 0.81435
Target:  5'- aCCUggCGCCGCUGCUGCggggcccaacccGCGGCGauUCGGa -3'
miRNA:   3'- -GGAg-GCGGUGGCGGCG------------CGCUGC--AGCU- -5'
14371 5' -62 NC_003521.1 + 76272 0.66 0.81435
Target:  5'- aCggCCGCCugCGagaCCuCGCGGuCGUCGAa -3'
miRNA:   3'- gGa-GGCGGugGC---GGcGCGCU-GCAGCU- -5'
14371 5' -62 NC_003521.1 + 116555 0.66 0.81435
Target:  5'- cUCUCgCGCCcgcagacaccaaGCaUGCCGCGCGGCGacccaacccuUCGGa -3'
miRNA:   3'- -GGAG-GCGG------------UG-GCGGCGCGCUGC----------AGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.