miRNA display CGI


Results 1 - 20 of 274 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 3' -62.8 NC_003521.1 + 59708 0.66 0.769224
Target:  5'- uCGGGUCGCcUgguggcgcaauucgaCACGCCGgauCUGgCCUUCg -3'
miRNA:   3'- -GCCCAGCGuG---------------GUGCGGC---GACgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 216634 0.66 0.765748
Target:  5'- gCGGG-CGCGCCgACGCCGggaaaGCgaagaCUCCg -3'
miRNA:   3'- -GCCCaGCGUGG-UGCGGCga---CGg----GAGG- -5'
14387 3' -62.8 NC_003521.1 + 103222 0.66 0.765748
Target:  5'- uGaGGUCGCcgGCCAgGCgGCgGCCCa-- -3'
miRNA:   3'- gC-CCAGCG--UGGUgCGgCGaCGGGagg -5'
14387 3' -62.8 NC_003521.1 + 168076 0.66 0.765748
Target:  5'- gGaGGUagagcgcgGCACCACcgGUCGgaUGCCCUCCa -3'
miRNA:   3'- gC-CCAg-------CGUGGUG--CGGCg-ACGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 183563 0.66 0.765748
Target:  5'- uGGGUCGCuucuacaucaagGCCAacugGCCGCgcgagaGCCgCUCg -3'
miRNA:   3'- gCCCAGCG------------UGGUg---CGGCGa-----CGG-GAGg -5'
14387 3' -62.8 NC_003521.1 + 163103 0.66 0.765748
Target:  5'- uCGGGcgccaGCGCCACGaccaCCGCcG-CCUCCu -3'
miRNA:   3'- -GCCCag---CGUGGUGC----GGCGaCgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 213310 0.66 0.765748
Target:  5'- uGGG-CGCcUCGgGCCGCacGCCCcCCg -3'
miRNA:   3'- gCCCaGCGuGGUgCGGCGa-CGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 36016 0.66 0.765748
Target:  5'- gGaGGUgGCGgccCCACGaCCGUcuugGCCCUCUu -3'
miRNA:   3'- gC-CCAgCGU---GGUGC-GGCGa---CGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 49820 0.66 0.765748
Target:  5'- uGGGcgccgUGCAgUGCGCCGUgcagacgGCCgUCCa -3'
miRNA:   3'- gCCCa----GCGUgGUGCGGCGa------CGGgAGG- -5'
14387 3' -62.8 NC_003521.1 + 148781 0.66 0.765748
Target:  5'- gGcGGUCGCGCCGaggaGCCGCgGCUg--- -3'
miRNA:   3'- gC-CCAGCGUGGUg---CGGCGaCGGgagg -5'
14387 3' -62.8 NC_003521.1 + 56458 0.66 0.765748
Target:  5'- -aGGUCcgagagGCGCCGCGCCaCgGCCCgCCc -3'
miRNA:   3'- gcCCAG------CGUGGUGCGGcGaCGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 150562 0.66 0.764876
Target:  5'- gCGGGUgGUggcggcgGCgGCGgCGCgGCuCCUCCu -3'
miRNA:   3'- -GCCCAgCG-------UGgUGCgGCGaCG-GGAGG- -5'
14387 3' -62.8 NC_003521.1 + 174217 0.66 0.763129
Target:  5'- gGGGUCGCGCgggucgggcaggggCGCGUCGgaGCUCa-- -3'
miRNA:   3'- gCCCAGCGUG--------------GUGCGGCgaCGGGagg -5'
14387 3' -62.8 NC_003521.1 + 123343 0.66 0.756986
Target:  5'- aCGGccccaGCGCCGCgGCCG-UGgCCUCCg -3'
miRNA:   3'- -GCCcag--CGUGGUG-CGGCgACgGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 132368 0.66 0.756986
Target:  5'- aGGGUaucaGCGgCACGCCGCacaCCCgcgaggucaUCCg -3'
miRNA:   3'- gCCCAg---CGUgGUGCGGCGac-GGG---------AGG- -5'
14387 3' -62.8 NC_003521.1 + 200589 0.66 0.756986
Target:  5'- -cGGagGCgGCCcuGCGaCCGCUGCCCgCCu -3'
miRNA:   3'- gcCCagCG-UGG--UGC-GGCGACGGGaGG- -5'
14387 3' -62.8 NC_003521.1 + 39421 0.66 0.756986
Target:  5'- uGGG-CGCcgagaaaAUGCCGCUGCCggCCg -3'
miRNA:   3'- gCCCaGCGugg----UGCGGCGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 115943 0.66 0.756986
Target:  5'- aGGGcgaCGCGCUGUGCCuGCUGCCg-CCg -3'
miRNA:   3'- gCCCa--GCGUGGUGCGG-CGACGGgaGG- -5'
14387 3' -62.8 NC_003521.1 + 174531 0.66 0.756986
Target:  5'- cCGGGUCGgcugugccCGCCAguCCGCcuCCCUCCu -3'
miRNA:   3'- -GCCCAGC--------GUGGUgcGGCGacGGGAGG- -5'
14387 3' -62.8 NC_003521.1 + 49677 0.66 0.756986
Target:  5'- cCGGGcgaGCGCgGCGCUGUcGCCgUCa -3'
miRNA:   3'- -GCCCag-CGUGgUGCGGCGaCGGgAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.