miRNA display CGI


Results 1 - 20 of 179 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14387 5' -53.4 NC_003521.1 + 85147 0.66 0.992185
Target:  5'- -cGGCG-GCGAUGACAUCGUccaGACc -3'
miRNA:   3'- caCUGCgCGUUGCUGUAGCAcg-CUGu -5'
14387 5' -53.4 NC_003521.1 + 180637 0.66 0.992185
Target:  5'- -cGGCGCGCGuucucacgccGCGGC-UCGcuaccgggGCGACGa -3'
miRNA:   3'- caCUGCGCGU----------UGCUGuAGCa-------CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 18442 0.66 0.992185
Target:  5'- -aGACGCGCGGCcugugccgcuucGACcgCGggcugcGCGGCGa -3'
miRNA:   3'- caCUGCGCGUUG------------CUGuaGCa-----CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 151307 0.66 0.992185
Target:  5'- -cGACGCGCGcaagGCGGCcaggCGgGUGGCGu -3'
miRNA:   3'- caCUGCGCGU----UGCUGua--GCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 197648 0.66 0.992185
Target:  5'- ----gGuCGCggUGGCGcUCGUGCGGCAg -3'
miRNA:   3'- cacugC-GCGuuGCUGU-AGCACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 74350 0.66 0.992185
Target:  5'- aUGGCGCuGCugcGCGGCuacggccaGUGCGGCGa -3'
miRNA:   3'- cACUGCG-CGu--UGCUGuag-----CACGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 36731 0.66 0.992185
Target:  5'- aGUGGCGCcaccagguGCAcguggcccACGACGUgugGUGCGACu -3'
miRNA:   3'- -CACUGCG--------CGU--------UGCUGUAg--CACGCUGu -5'
14387 5' -53.4 NC_003521.1 + 110688 0.66 0.992185
Target:  5'- gGUGGCG-GCAGCGGCggCGccGcCGACGa -3'
miRNA:   3'- -CACUGCgCGUUGCUGuaGCa-C-GCUGU- -5'
14387 5' -53.4 NC_003521.1 + 36979 0.66 0.992185
Target:  5'- gGUGcuCG-GCGGCGACAUCc-GCGACGa -3'
miRNA:   3'- -CACu-GCgCGUUGCUGUAGcaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 33258 0.66 0.99208
Target:  5'- --cACGCGCAGCaGGCcggcgcgAUCGUGCaGCAg -3'
miRNA:   3'- cacUGCGCGUUG-CUG-------UAGCACGcUGU- -5'
14387 5' -53.4 NC_003521.1 + 116079 0.66 0.99208
Target:  5'- -aGGCGCagcgaguGCAGCGGCugucCGcGCGACAu -3'
miRNA:   3'- caCUGCG-------CGUUGCUGua--GCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 210653 0.66 0.991088
Target:  5'- --cGCGCGCucauGCGACAaCGcGUGACGc -3'
miRNA:   3'- cacUGCGCGu---UGCUGUaGCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 187276 0.66 0.991088
Target:  5'- -aGACGCGaCAGCGGCAccUCGacccggaGCgGACAg -3'
miRNA:   3'- caCUGCGC-GUUGCUGU--AGCa------CG-CUGU- -5'
14387 5' -53.4 NC_003521.1 + 168984 0.66 0.991088
Target:  5'- -cGACGCGCGucggucGCGGgAggCGgGCGACGg -3'
miRNA:   3'- caCUGCGCGU------UGCUgUa-GCaCGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 169716 0.66 0.991088
Target:  5'- -cGACGUcccccaagaGCGACGuGCGUCGUcgacGCGACu -3'
miRNA:   3'- caCUGCG---------CGUUGC-UGUAGCA----CGCUGu -5'
14387 5' -53.4 NC_003521.1 + 127368 0.66 0.991088
Target:  5'- -cGugGUGC-GCGGCAg-GUGCGugAu -3'
miRNA:   3'- caCugCGCGuUGCUGUagCACGCugU- -5'
14387 5' -53.4 NC_003521.1 + 98354 0.66 0.991088
Target:  5'- cUGACaGCGCAugACGACGgauUCGgGCGAa- -3'
miRNA:   3'- cACUG-CGCGU--UGCUGU---AGCaCGCUgu -5'
14387 5' -53.4 NC_003521.1 + 43609 0.66 0.990374
Target:  5'- -cGACgaGCGCGACGACAaCGaggacgaggaggagGCGGCGg -3'
miRNA:   3'- caCUG--CGCGUUGCUGUaGCa-------------CGCUGU- -5'
14387 5' -53.4 NC_003521.1 + 229623 0.66 0.989874
Target:  5'- cGUGAgGCGCGACGGC-UCugaaGACAg -3'
miRNA:   3'- -CACUgCGCGUUGCUGuAGcacgCUGU- -5'
14387 5' -53.4 NC_003521.1 + 207931 0.66 0.989874
Target:  5'- -cGGCGgGCAcgGCGGCAgcacCG-GCGGCGc -3'
miRNA:   3'- caCUGCgCGU--UGCUGUa---GCaCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.