miRNA display CGI


Results 1 - 20 of 97 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14421 3' -56.8 NC_003521.1 + 90897 0.66 0.948068
Target:  5'- aCGACGAGgAGGg--CGCGuUAUCGuCCUc -3'
miRNA:   3'- -GUUGCUCgUCCagaGCGC-GUAGC-GGA- -5'
14421 3' -56.8 NC_003521.1 + 72546 0.66 0.948068
Target:  5'- gCGGCGAcGguGucgucGUCUCGCgaccucucaGCGUCGCCa -3'
miRNA:   3'- -GUUGCU-CguC-----CAGAGCG---------CGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 74586 0.66 0.948068
Target:  5'- gCGGCGGcGCGGcGUCccgcggccggCGCGCcUCGCCg -3'
miRNA:   3'- -GUUGCU-CGUC-CAGa---------GCGCGuAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 112369 0.66 0.947653
Target:  5'- gCGGCGGcuGCGGcGUCUCguccaccuggcugGCGCAgugCGCCg -3'
miRNA:   3'- -GUUGCU--CGUC-CAGAG-------------CGCGUa--GCGGa -5'
14421 3' -56.8 NC_003521.1 + 172653 0.66 0.946394
Target:  5'- gGAUGAcGUAGGUaCUgGCGCAgacgcagcaccugCGCCUg -3'
miRNA:   3'- gUUGCU-CGUCCA-GAgCGCGUa------------GCGGA- -5'
14421 3' -56.8 NC_003521.1 + 56142 0.66 0.943816
Target:  5'- gGGCGAGUGcGG-CUCGUGCugcUCGCUg -3'
miRNA:   3'- gUUGCUCGU-CCaGAGCGCGu--AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 31138 0.66 0.943816
Target:  5'- uCGugGAGCAGcGUUaCGUGCucuUgGCCUa -3'
miRNA:   3'- -GUugCUCGUC-CAGaGCGCGu--AgCGGA- -5'
14421 3' -56.8 NC_003521.1 + 176602 0.66 0.943816
Target:  5'- gGAUGAGCAcGUcCUCGCGCugcugcGUgGCCa -3'
miRNA:   3'- gUUGCUCGUcCA-GAGCGCG------UAgCGGa -5'
14421 3' -56.8 NC_003521.1 + 162870 0.66 0.939342
Target:  5'- cCAACGcGCAGGggcgCGCGCAgguggGCCg -3'
miRNA:   3'- -GUUGCuCGUCCaga-GCGCGUag---CGGa -5'
14421 3' -56.8 NC_003521.1 + 103561 0.66 0.939342
Target:  5'- uGACGGGgccCAGGUCgccCGCGCAgaaGCUg -3'
miRNA:   3'- gUUGCUC---GUCCAGa--GCGCGUag-CGGa -5'
14421 3' -56.8 NC_003521.1 + 81968 0.66 0.939342
Target:  5'- aGGCu-GCAGGUCUCGCGguagaGCCa -3'
miRNA:   3'- gUUGcuCGUCCAGAGCGCguag-CGGa -5'
14421 3' -56.8 NC_003521.1 + 126381 0.66 0.939342
Target:  5'- uGACGuucucGCGGGUCUgGUGC--CGCCa -3'
miRNA:   3'- gUUGCu----CGUCCAGAgCGCGuaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 207321 0.66 0.939342
Target:  5'- aCAGgGAuaGCAGGUCUUcgggggGCGCGUC-CCUc -3'
miRNA:   3'- -GUUgCU--CGUCCAGAG------CGCGUAGcGGA- -5'
14421 3' -56.8 NC_003521.1 + 88170 0.66 0.939342
Target:  5'- cCAGCucGCAGGUgaCG-GCGUCGCUg -3'
miRNA:   3'- -GUUGcuCGUCCAgaGCgCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 46888 0.66 0.939342
Target:  5'- aGGCGaAGUGGGUgUCGgGCAcUCGUCg -3'
miRNA:   3'- gUUGC-UCGUCCAgAGCgCGU-AGCGGa -5'
14421 3' -56.8 NC_003521.1 + 106271 0.66 0.939342
Target:  5'- gGACGAGC------UGCGCAUCGCCg -3'
miRNA:   3'- gUUGCUCGuccagaGCGCGUAGCGGa -5'
14421 3' -56.8 NC_003521.1 + 184357 0.66 0.939342
Target:  5'- --uCGGGCGGGcCgUgGCGCggCGCCUc -3'
miRNA:   3'- guuGCUCGUCCaG-AgCGCGuaGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 195740 0.66 0.935125
Target:  5'- cCAGCGuaugcgccaccucacGCAGGa--CGCGCGUUGCCUg -3'
miRNA:   3'- -GUUGCu--------------CGUCCagaGCGCGUAGCGGA- -5'
14421 3' -56.8 NC_003521.1 + 215001 0.66 0.934646
Target:  5'- gAGCcAGCGGcGUCUCGUaacGCAcCGCCa -3'
miRNA:   3'- gUUGcUCGUC-CAGAGCG---CGUaGCGGa -5'
14421 3' -56.8 NC_003521.1 + 51504 0.66 0.934646
Target:  5'- uGAUGAGCAgGGUCUUcgggGC-CAUCGUCg -3'
miRNA:   3'- gUUGCUCGU-CCAGAG----CGcGUAGCGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.