miRNA display CGI


Results 1 - 20 of 592 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14422 3' -54.7 NC_003521.1 + 230405 0.65 0.989344
Target:  5'- cGCCGACacgcgguuuuugaGAUG-CGG-GGCGAC-GCGGu -3'
miRNA:   3'- -CGGCUG-------------CUACuGCUgCCGUUGuCGCC- -5'
14422 3' -54.7 NC_003521.1 + 177786 0.65 0.98895
Target:  5'- gGCCGACGGggccuguccgcugGugGGCGuCGugGGCGc -3'
miRNA:   3'- -CGGCUGCUa------------CugCUGCcGUugUCGCc -5'
14422 3' -54.7 NC_003521.1 + 427 0.66 0.988129
Target:  5'- uGCUGGCGAggccaaGcCGGCGGUAAgcCAGCcGGu -3'
miRNA:   3'- -CGGCUGCUa-----CuGCUGCCGUU--GUCG-CC- -5'
14422 3' -54.7 NC_003521.1 + 99387 0.66 0.988129
Target:  5'- cGUCGGCGAaGAUGGugaGGUccAGCAGCGu -3'
miRNA:   3'- -CGGCUGCUaCUGCUg--CCG--UUGUCGCc -5'
14422 3' -54.7 NC_003521.1 + 132421 0.66 0.988129
Target:  5'- cGCCuguGCGgcGACGccGCuGGUAGCGGUGGu -3'
miRNA:   3'- -CGGc--UGCuaCUGC--UG-CCGUUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 187912 0.66 0.988129
Target:  5'- -gCGAguCGAUGACGACGuGCGucuugaAUGGUGGc -3'
miRNA:   3'- cgGCU--GCUACUGCUGC-CGU------UGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 980 0.66 0.988129
Target:  5'- gGCCGGCGGUcugcucccGugGGcCGGCcguACGGCu- -3'
miRNA:   3'- -CGGCUGCUA--------CugCU-GCCGu--UGUCGcc -5'
14422 3' -54.7 NC_003521.1 + 170523 0.66 0.988129
Target:  5'- -aCGGCG-UG-UGACGGgGACGGgGGg -3'
miRNA:   3'- cgGCUGCuACuGCUGCCgUUGUCgCC- -5'
14422 3' -54.7 NC_003521.1 + 52225 0.66 0.988129
Target:  5'- gGCCGGuag-GGCGGCGGgCuacaguugGGCAGCGGc -3'
miRNA:   3'- -CGGCUgcuaCUGCUGCC-G--------UUGUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 53352 0.66 0.988129
Target:  5'- cGCCGGCGc-GGCGGCGGaggggcCGACAGaccgagcaGGa -3'
miRNA:   3'- -CGGCUGCuaCUGCUGCC------GUUGUCg-------CC- -5'
14422 3' -54.7 NC_003521.1 + 218080 0.66 0.988129
Target:  5'- aGCaCaGCGA-GGCGGCGGCGcCGGUGa -3'
miRNA:   3'- -CG-GcUGCUaCUGCUGCCGUuGUCGCc -5'
14422 3' -54.7 NC_003521.1 + 7075 0.66 0.988129
Target:  5'- cCCGGUGAgaagaagcaGACG-CGGCGGCGGCGu -3'
miRNA:   3'- cGGCUGCUa--------CUGCuGCCGUUGUCGCc -5'
14422 3' -54.7 NC_003521.1 + 33210 0.66 0.988129
Target:  5'- gGCCGGCGAgccgcccaGACGGaucuuGCAGcCGGc -3'
miRNA:   3'- -CGGCUGCUacug----CUGCCgu---UGUC-GCC- -5'
14422 3' -54.7 NC_003521.1 + 171676 0.66 0.988129
Target:  5'- cGUCGGCGGcaUGACGA--GCAACAaGCGu -3'
miRNA:   3'- -CGGCUGCU--ACUGCUgcCGUUGU-CGCc -5'
14422 3' -54.7 NC_003521.1 + 127298 0.66 0.988129
Target:  5'- cGCCGugG-UGGCGcgccucgauguUGGCGuugguCAGCGGc -3'
miRNA:   3'- -CGGCugCuACUGCu----------GCCGUu----GUCGCC- -5'
14422 3' -54.7 NC_003521.1 + 168051 0.66 0.988129
Target:  5'- aGCUGugcCGccGACGGCGGguGCucgagacGCGGg -3'
miRNA:   3'- -CGGCu--GCuaCUGCUGCCguUGu------CGCC- -5'
14422 3' -54.7 NC_003521.1 + 40749 0.66 0.988129
Target:  5'- uGCUGGCGAggccaaGcCGGCGGUAAgcCAGCcGGu -3'
miRNA:   3'- -CGGCUGCUa-----CuGCUGCCGUU--GUCG-CC- -5'
14422 3' -54.7 NC_003521.1 + 80539 0.66 0.988129
Target:  5'- -aCGACGAguACGACGaCGACGGCu- -3'
miRNA:   3'- cgGCUGCUacUGCUGCcGUUGUCGcc -5'
14422 3' -54.7 NC_003521.1 + 197426 0.66 0.988129
Target:  5'- cGCCGaaaGCGAagaggccaUGGCcaGGCGGCGcCAGCGc -3'
miRNA:   3'- -CGGC---UGCU--------ACUG--CUGCCGUuGUCGCc -5'
14422 3' -54.7 NC_003521.1 + 165741 0.66 0.988129
Target:  5'- cGuuGuuGAggGAgGGCGGCGGCGGCu- -3'
miRNA:   3'- -CggCugCUa-CUgCUGCCGUUGUCGcc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.