miRNA display CGI


Results 1 - 20 of 389 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14422 5' -53.9 NC_003521.1 + 21631 0.66 0.991073
Target:  5'- cCGCCAUCAugggccuggggcUCAgCCGCCAcuggaaCACGCUGcGg -3'
miRNA:   3'- -GUGGUAGU------------AGU-GGUGGUa-----GUGCGGC-C- -5'
14422 5' -53.9 NC_003521.1 + 13869 0.66 0.991073
Target:  5'- uCugCGggCggCGCCGCCAUgGauuuCGCCGGg -3'
miRNA:   3'- -GugGUa-GuaGUGGUGGUAgU----GCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 33314 0.66 0.991073
Target:  5'- uCACCcacGUCAcugcuggCACCACCcgCugGgCGGc -3'
miRNA:   3'- -GUGG---UAGUa------GUGGUGGuaGugCgGCC- -5'
14422 5' -53.9 NC_003521.1 + 93946 0.66 0.991073
Target:  5'- cCGCCGUCGUCuggcuuCCuCC-UCugGgCGGg -3'
miRNA:   3'- -GUGGUAGUAGu-----GGuGGuAGugCgGCC- -5'
14422 5' -53.9 NC_003521.1 + 71205 0.66 0.991073
Target:  5'- gCACCGUa--CACCuCCAcCACGgCGGg -3'
miRNA:   3'- -GUGGUAguaGUGGuGGUaGUGCgGCC- -5'
14422 5' -53.9 NC_003521.1 + 192918 0.66 0.991073
Target:  5'- gGCCGUCAggGCCAUCAggACGgCGa -3'
miRNA:   3'- gUGGUAGUagUGGUGGUagUGCgGCc -5'
14422 5' -53.9 NC_003521.1 + 17423 0.66 0.991073
Target:  5'- gCGCCGggg-CGCCACaCGgccCGCGUCGGg -3'
miRNA:   3'- -GUGGUaguaGUGGUG-GUa--GUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 111849 0.66 0.991073
Target:  5'- cCAgCAUCGUCuuuuuCCAgCGcCACGCCGc -3'
miRNA:   3'- -GUgGUAGUAGu----GGUgGUaGUGCGGCc -5'
14422 5' -53.9 NC_003521.1 + 84740 0.66 0.991073
Target:  5'- uGCCGUCGUCGuCUugCucgggCGCGgCGGc -3'
miRNA:   3'- gUGGUAGUAGU-GGugGua---GUGCgGCC- -5'
14422 5' -53.9 NC_003521.1 + 123937 0.66 0.991073
Target:  5'- cCGCCggCG-CGCCGCCGcagcCGCGCCa- -3'
miRNA:   3'- -GUGGuaGUaGUGGUGGUa---GUGCGGcc -5'
14422 5' -53.9 NC_003521.1 + 17334 0.66 0.991073
Target:  5'- uCGCCgAUCcgcccCACCucccggGCCGUgACGCCGGc -3'
miRNA:   3'- -GUGG-UAGua---GUGG------UGGUAgUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 44152 0.66 0.991073
Target:  5'- aCGCCGUCGUCGagCAgCAgcUgGCGCCGu -3'
miRNA:   3'- -GUGGUAGUAGUg-GUgGU--AgUGCGGCc -5'
14422 5' -53.9 NC_003521.1 + 187645 0.66 0.991073
Target:  5'- uCACCGacggCGUCGCCgACCuccUCGcCGCCGu -3'
miRNA:   3'- -GUGGUa---GUAGUGG-UGGu--AGU-GCGGCc -5'
14422 5' -53.9 NC_003521.1 + 218658 0.66 0.991073
Target:  5'- gCGCC-UCGUCccucuCCACCGUCuC-CCGGu -3'
miRNA:   3'- -GUGGuAGUAGu----GGUGGUAGuGcGGCC- -5'
14422 5' -53.9 NC_003521.1 + 14170 0.66 0.991073
Target:  5'- gAUCAUCGUCAgCGCCAagaAgGCCGc -3'
miRNA:   3'- gUGGUAGUAGUgGUGGUag-UgCGGCc -5'
14422 5' -53.9 NC_003521.1 + 161970 0.66 0.991073
Target:  5'- gACCGgcggAUCACCACCuUCG-GCUGGu -3'
miRNA:   3'- gUGGUag--UAGUGGUGGuAGUgCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 113521 0.66 0.990958
Target:  5'- aCGCCAaCAUCgaggcgcGCCACCAcggCGUGUCGGa -3'
miRNA:   3'- -GUGGUaGUAG-------UGGUGGUa--GUGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 222551 0.66 0.990958
Target:  5'- aGCCAUCAUgcccaccacgUACCACUcgCagcagagGCGCUGGc -3'
miRNA:   3'- gUGGUAGUA----------GUGGUGGuaG-------UGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 222733 0.66 0.990365
Target:  5'- gGCCGcUCAucUCGCgCGCCGUCugggcuacggccacgGCGUCGGu -3'
miRNA:   3'- gUGGU-AGU--AGUG-GUGGUAG---------------UGCGGCC- -5'
14422 5' -53.9 NC_003521.1 + 100647 0.66 0.989869
Target:  5'- gGCCGUCc-CGCCG-CGUUGCGUCGGc -3'
miRNA:   3'- gUGGUAGuaGUGGUgGUAGUGCGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.