Results 41 - 60 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
14437 | 5' | -58.7 | NC_003521.1 | + | 17641 | 0.71 | 0.627825 |
Target: 5'- cUGCGGaGCUAcGUacgCCAGCAcCGGGGCa -3' miRNA: 3'- -ACGCC-CGGUuCA---GGUCGUuGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 135217 | 0.7 | 0.637698 |
Target: 5'- aGUGGGCCucGUCCaccAGCAGC-AGGUg -3' miRNA: 3'- aCGCCCGGuuCAGG---UCGUUGcUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 219704 | 0.7 | 0.637698 |
Target: 5'- gGCGGGUCG---UCGGCAGCGgAGGCa -3' miRNA: 3'- aCGCCCGGUucaGGUCGUUGC-UCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 148460 | 0.7 | 0.647566 |
Target: 5'- aGCGGGCgagcggacgggCAGGacggaggguUCCGGgAGCGAGGCg -3' miRNA: 3'- aCGCCCG-----------GUUC---------AGGUCgUUGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 175804 | 0.7 | 0.647566 |
Target: 5'- cGCGGGCCAGGaugcgCguGCua-GGGGCg -3' miRNA: 3'- aCGCCCGGUUCa----GguCGuugCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 99311 | 0.7 | 0.647566 |
Target: 5'- aGCaGG-CAGGUCCGG-GACGAGGCg -3' miRNA: 3'- aCGcCCgGUUCAGGUCgUUGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 35218 | 0.7 | 0.647566 |
Target: 5'- cGCGGGUCGGaUCgAGCGuccuCGGGGCg -3' miRNA: 3'- aCGCCCGGUUcAGgUCGUu---GCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 66880 | 0.7 | 0.657423 |
Target: 5'- cUGU-GGCCGAGaCCAGUGACGAGGa- -3' miRNA: 3'- -ACGcCCGGUUCaGGUCGUUGCUCCga -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 34140 | 0.7 | 0.657423 |
Target: 5'- aGCaGGGCCAGGcCCAcGCGcACGaAGGCc -3' miRNA: 3'- aCG-CCCGGUUCaGGU-CGU-UGC-UCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 117490 | 0.7 | 0.657423 |
Target: 5'- cGaCGGGCCu-GUCCGGCGggGCGuacGGCg -3' miRNA: 3'- aC-GCCCGGuuCAGGUCGU--UGCu--CCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 13084 | 0.7 | 0.68685 |
Target: 5'- aGCGGaCCAAGUCCgaggggggaAGCGGCacaGAGGCc -3' miRNA: 3'- aCGCCcGGUUCAGG---------UCGUUG---CUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 59434 | 0.7 | 0.68685 |
Target: 5'- aGCGGcGCCGccgCCGGCAGCGAG-CUc -3' miRNA: 3'- aCGCC-CGGUucaGGUCGUUGCUCcGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 198728 | 0.7 | 0.68685 |
Target: 5'- cGCGGGCUuGGUgCCAG--ACGAGGUc -3' miRNA: 3'- aCGCCCGGuUCA-GGUCguUGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 118552 | 0.69 | 0.69367 |
Target: 5'- gGCuuGGGCCGuAGUauguaaguagacgcCCAGCGACGuGGCg -3' miRNA: 3'- aCG--CCCGGU-UCA--------------GGUCGUUGCuCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 166868 | 0.69 | 0.695614 |
Target: 5'- gGCGGGCgcaggucguacauCAAGUCCgcgGGCGcGCGGGGUa -3' miRNA: 3'- aCGCCCG-------------GUUCAGG---UCGU-UGCUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 115373 | 0.69 | 0.696585 |
Target: 5'- cGCuGGCCAGGgCCGGCAuguGCaGGGCg -3' miRNA: 3'- aCGcCCGGUUCaGGUCGU---UGcUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 34177 | 0.69 | 0.696585 |
Target: 5'- cGCGGGCCAAcuuGaCCAGCuuauCGuGGCc -3' miRNA: 3'- aCGCCCGGUU---CaGGUCGuu--GCuCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 131060 | 0.69 | 0.70627 |
Target: 5'- aGUGGGCCA--UgCAGCAGCuGGGCc -3' miRNA: 3'- aCGCCCGGUucAgGUCGUUGcUCCGa -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 103687 | 0.69 | 0.70627 |
Target: 5'- gGCGGG-CGAGUCCgAGCGuccgaACGcGGGCUc -3' miRNA: 3'- aCGCCCgGUUCAGG-UCGU-----UGC-UCCGA- -5' |
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14437 | 5' | -58.7 | NC_003521.1 | + | 18978 | 0.69 | 0.70627 |
Target: 5'- aGgGGGUCGAGgacgcgCCGcGCGACGAGGg- -3' miRNA: 3'- aCgCCCGGUUCa-----GGU-CGUUGCUCCga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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