miRNA display CGI


Results 1 - 20 of 205 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14446 5' -52.6 NC_003521.1 + 185208 0.65 0.996146
Target:  5'- cGGUGUGgGC-CGCGCGGgacugcguguacgacGAGGAGAc -3'
miRNA:   3'- -CCGCGCgUGcGCGCGCCau-------------UUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 83145 0.66 0.995714
Target:  5'- aGCGCGUGCGCGCaugcagaugauGCGaaaucacAAAGAAGAu -3'
miRNA:   3'- cCGCGCGUGCGCG-----------CGCca-----UUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 120579 0.66 0.995714
Target:  5'- aGGCGaUGCACG-GCGCGGc-------- -3'
miRNA:   3'- -CCGC-GCGUGCgCGCGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 3217 0.66 0.995714
Target:  5'- cGGUGUGUGCGUGUuCGGUGAu----- -3'
miRNA:   3'- -CCGCGCGUGCGCGcGCCAUUuuuucu -5'
14446 5' -52.6 NC_003521.1 + 123968 0.66 0.995714
Target:  5'- cGCGCGCAgGuCGuCGCGGUc------- -3'
miRNA:   3'- cCGCGCGUgC-GC-GCGCCAuuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 31020 0.66 0.995714
Target:  5'- cGGCGaGgACGCGUucGUGGUGGugGGGGg -3'
miRNA:   3'- -CCGCgCgUGCGCG--CGCCAUUuuUUCU- -5'
14446 5' -52.6 NC_003521.1 + 150929 0.66 0.995714
Target:  5'- cGGCGUGUggGCcgaGCGCGGUcAGAu--- -3'
miRNA:   3'- -CCGCGCGugCG---CGCGCCAuUUUuucu -5'
14446 5' -52.6 NC_003521.1 + 150748 0.66 0.995714
Target:  5'- -cCGCGCGCGUGCGCGc--------- -3'
miRNA:   3'- ccGCGCGUGCGCGCGCcauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 103053 0.66 0.995714
Target:  5'- aGGUGCugcagacaggGCGgGUGCGCGGgcGAGGGc- -3'
miRNA:   3'- -CCGCG----------CGUgCGCGCGCCauUUUUUcu -5'
14446 5' -52.6 NC_003521.1 + 115651 0.66 0.995649
Target:  5'- uGCGUGUcgGCGCcccagugGCG-GGUGAAGAAGGc -3'
miRNA:   3'- cCGCGCG--UGCG-------CGCgCCAUUUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 147445 0.66 0.99503
Target:  5'- aGGCuGCGCGCGCGgaaguaGCGGa-------- -3'
miRNA:   3'- -CCG-CGCGUGCGCg-----CGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 211709 0.66 0.99503
Target:  5'- aGCaGCGCA-GCGCGCGGa-------- -3'
miRNA:   3'- cCG-CGCGUgCGCGCGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 90880 0.66 0.99503
Target:  5'- aGCGCGCAUGCGCaCGuUGAAc---- -3'
miRNA:   3'- cCGCGCGUGCGCGcGCcAUUUuuucu -5'
14446 5' -52.6 NC_003521.1 + 200341 0.66 0.99503
Target:  5'- cGGCGCcgugGCGCGC-CGCGGa-------- -3'
miRNA:   3'- -CCGCG----CGUGCGcGCGCCauuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 91175 0.66 0.99426
Target:  5'- aGgGCGCAUGCGCcucuggaaGCGGUAc------ -3'
miRNA:   3'- cCgCGCGUGCGCG--------CGCCAUuuuuucu -5'
14446 5' -52.6 NC_003521.1 + 32731 0.66 0.99426
Target:  5'- uGGCGaCGCcaccaGCGgGCGCGG-AGGAAc-- -3'
miRNA:   3'- -CCGC-GCG-----UGCgCGCGCCaUUUUUucu -5'
14446 5' -52.6 NC_003521.1 + 59656 0.66 0.99426
Target:  5'- cGGCaGaCGCugGCGCGCcu---GGAGGAg -3'
miRNA:   3'- -CCG-C-GCGugCGCGCGccauuUUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 179543 0.66 0.99426
Target:  5'- aGGUGCGCGCGgcucaGCGCcaagcaGUAAcAGAGGc -3'
miRNA:   3'- -CCGCGCGUGCg----CGCGc-----CAUUuUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 174197 0.66 0.994178
Target:  5'- aGGUGCGaCGCGCccacguuggggucGCGCGGgucgGGcAGGGGc -3'
miRNA:   3'- -CCGCGC-GUGCG-------------CGCGCCa---UUuUUUCU- -5'
14446 5' -52.6 NC_003521.1 + 138709 0.66 0.994178
Target:  5'- gGGCG-GCACGgGCGCuggcuGGUGGugcguccGGAGGGu -3'
miRNA:   3'- -CCGCgCGUGCgCGCG-----CCAUU-------UUUUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.