miRNA display CGI


Results 1 - 20 of 219 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14452 3' -60.1 NC_003521.1 + 110875 0.66 0.892671
Target:  5'- gCgGCCCGCGGCagaaCUGcGCCGUCUcgGCc -3'
miRNA:   3'- -GgUGGGCGCUGga--GGCcUGGCAGA--CG- -5'
14452 3' -60.1 NC_003521.1 + 443 0.66 0.892671
Target:  5'- aCGCCUGCG-CUUCUc-GCCGUUUGCc -3'
miRNA:   3'- gGUGGGCGCuGGAGGccUGGCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 54499 0.66 0.892671
Target:  5'- -gGCCgGCGGCCcggCgUGGACCaggaUCUGCa -3'
miRNA:   3'- ggUGGgCGCUGGa--G-GCCUGGc---AGACG- -5'
14452 3' -60.1 NC_003521.1 + 113975 0.66 0.892671
Target:  5'- aCgGCagGCGGCCggCCGGgcACCGgCUGCa -3'
miRNA:   3'- -GgUGggCGCUGGa-GGCC--UGGCaGACG- -5'
14452 3' -60.1 NC_003521.1 + 200670 0.66 0.892671
Target:  5'- aCGCCUGCG-CUUCUc-GCCGUUUGCc -3'
miRNA:   3'- gGUGGGCGCuGGAGGccUGGCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 181149 0.66 0.892053
Target:  5'- uCCACCUgGCGucugagcuCCUCCaGGCgcgccagCGUCUGCc -3'
miRNA:   3'- -GGUGGG-CGCu-------GGAGGcCUG-------GCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 74724 0.66 0.886406
Target:  5'- -gGCCCGCGugaACCUgCCGGcCCGcUCccGCu -3'
miRNA:   3'- ggUGGGCGC---UGGA-GGCCuGGC-AGa-CG- -5'
14452 3' -60.1 NC_003521.1 + 6698 0.66 0.886406
Target:  5'- gCGCCCGCGAgCgcugCUGGgucucGCCGUggUGCa -3'
miRNA:   3'- gGUGGGCGCUgGa---GGCC-----UGGCAg-ACG- -5'
14452 3' -60.1 NC_003521.1 + 105210 0.66 0.886406
Target:  5'- uCCGCCCGCGAgCUgCGcGgCGUCa-- -3'
miRNA:   3'- -GGUGGGCGCUgGAgGCcUgGCAGacg -5'
14452 3' -60.1 NC_003521.1 + 13734 0.66 0.886406
Target:  5'- aCCGCUCaGUGGCU--CGGACCGUCaucugucucgacUGCg -3'
miRNA:   3'- -GGUGGG-CGCUGGagGCCUGGCAG------------ACG- -5'
14452 3' -60.1 NC_003521.1 + 196061 0.66 0.886406
Target:  5'- gCACCgGCcGCCUUccgCGGuCCGUCUcgGCg -3'
miRNA:   3'- gGUGGgCGcUGGAG---GCCuGGCAGA--CG- -5'
14452 3' -60.1 NC_003521.1 + 176455 0.66 0.886406
Target:  5'- gCGCCCGC-ACCU-CGGGCaUGUCcaggGCg -3'
miRNA:   3'- gGUGGGCGcUGGAgGCCUG-GCAGa---CG- -5'
14452 3' -60.1 NC_003521.1 + 171099 0.66 0.886406
Target:  5'- cCCGCCCgccguuaccGCGuACCUCaGGGCCG-CcGCc -3'
miRNA:   3'- -GGUGGG---------CGC-UGGAGgCCUGGCaGaCG- -5'
14452 3' -60.1 NC_003521.1 + 103958 0.66 0.885769
Target:  5'- gCCACCCGCcGCgagUCCGuGCauuucugCGUCUGCa -3'
miRNA:   3'- -GGUGGGCGcUGg--AGGCcUG-------GCAGACG- -5'
14452 3' -60.1 NC_003521.1 + 117644 0.66 0.88513
Target:  5'- uCCGCCUGCGACUgcgccgcgagaCGGugCGcCgGCc -3'
miRNA:   3'- -GGUGGGCGCUGGag---------GCCugGCaGaCG- -5'
14452 3' -60.1 NC_003521.1 + 43188 0.66 0.884489
Target:  5'- gCCA-CCGCGACCUgugcaacgugcucaUCGGcCUG-CUGCa -3'
miRNA:   3'- -GGUgGGCGCUGGA--------------GGCCuGGCaGACG- -5'
14452 3' -60.1 NC_003521.1 + 52312 0.66 0.882555
Target:  5'- -gGCCCGcCGGCCUCCucguaucucggcggcGGACCcaggcccacgGcCUGCu -3'
miRNA:   3'- ggUGGGC-GCUGGAGG---------------CCUGG----------CaGACG- -5'
14452 3' -60.1 NC_003521.1 + 170235 0.66 0.882554
Target:  5'- cUCAaCCGCGAgCUCgGcGACCGgcucuaccagcgcuuUCUGCg -3'
miRNA:   3'- -GGUgGGCGCUgGAGgC-CUGGC---------------AGACG- -5'
14452 3' -60.1 NC_003521.1 + 151200 0.66 0.882554
Target:  5'- cUCGCCCuaGACgUCggaaauaaacgacguCGGACCGUUUcGCg -3'
miRNA:   3'- -GGUGGGcgCUGgAG---------------GCCUGGCAGA-CG- -5'
14452 3' -60.1 NC_003521.1 + 211580 0.66 0.879948
Target:  5'- aCGCUCGCGGCgguguccCCGGAgaCGUcCUGCa -3'
miRNA:   3'- gGUGGGCGCUGga-----GGCCUg-GCA-GACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.