miRNA display CGI


Results 21 - 40 of 103 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14453 3' -49.7 NC_003521.1 + 203383 0.67 0.999103
Target:  5'- aCCGccgCGGuCGCCucAGGUCCCGGCc -3'
miRNA:   3'- aGGCua-GCUuGUGGu-UUUAGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 201780 0.7 0.985317
Target:  5'- aUUCGucUGGGCAcCCAGAcgCCCAGCAa -3'
miRNA:   3'- -AGGCuaGCUUGU-GGUUUuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 196571 0.71 0.981488
Target:  5'- cUCCGG-CGuGACGCCGGAcUCCCGcGCAc -3'
miRNA:   3'- -AGGCUaGC-UUGUGGUUUuAGGGU-CGU- -5'
14453 3' -49.7 NC_003521.1 + 193533 0.7 0.985317
Target:  5'- aCgGAUCGGACggaccuucGCCGGGAUCCUcgGGCGg -3'
miRNA:   3'- aGgCUAGCUUG--------UGGUUUUAGGG--UCGU- -5'
14453 3' -49.7 NC_003521.1 + 187771 0.67 0.998909
Target:  5'- cCCGAUCaaagaaGAACGCCGccGUCaCAGCGu -3'
miRNA:   3'- aGGCUAG------CUUGUGGUuuUAGgGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 186653 0.67 0.998355
Target:  5'- cUCCGGUUG-ACACaggggccCCCAGCAc -3'
miRNA:   3'- -AGGCUAGCuUGUGguuuua-GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 185016 0.66 0.999403
Target:  5'- aCUGGuUCGAgcGCACCAucuAUgCCGGCGg -3'
miRNA:   3'- aGGCU-AGCU--UGUGGUuu-UAgGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 182368 0.72 0.971657
Target:  5'- cCUGGUCGAcgugguGCGCgGAAAguucgCCCGGCAg -3'
miRNA:   3'- aGGCUAGCU------UGUGgUUUUa----GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 181087 0.68 0.996843
Target:  5'- gUCCGGccCGAAgGCCAGA--UCCGGCGu -3'
miRNA:   3'- -AGGCUa-GCUUgUGGUUUuaGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 179975 0.7 0.986988
Target:  5'- gCUGcgCGAACACCugcggGAAGUCCUGGUg -3'
miRNA:   3'- aGGCuaGCUUGUGG-----UUUUAGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 179855 0.69 0.992257
Target:  5'- cCUGGUCGGGCAUCAGGA-UgCGGCAc -3'
miRNA:   3'- aGGCUAGCUUGUGGUUUUaGgGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 179492 0.67 0.998681
Target:  5'- cUCCGG-C-AGCGCCGGGgaacacguGUCCCAGUAg -3'
miRNA:   3'- -AGGCUaGcUUGUGGUUU--------UAGGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 178719 0.78 0.754323
Target:  5'- cCCGcgCGGGCGCCGAAGcguUCCCGGUu -3'
miRNA:   3'- aGGCuaGCUUGUGGUUUU---AGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 175855 0.67 0.998414
Target:  5'- gUCUGGccUCGAcaauuaGCAgCCGAGAggugCCCAGCGa -3'
miRNA:   3'- -AGGCU--AGCU------UGU-GGUUUUa---GGGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 174374 0.66 0.999403
Target:  5'- --aGAuacUCGGACACCAGcgcguccugcAGUUCCAGCu -3'
miRNA:   3'- aggCU---AGCUUGUGGUU----------UUAGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 172306 0.69 0.994162
Target:  5'- gUCCGGugUCGGugGCGCCAGgccGGUCgCGGCGg -3'
miRNA:   3'- -AGGCU--AGCU--UGUGGUU---UUAGgGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 172216 0.68 0.997323
Target:  5'- gCCGAgucgaaGAAgGCCGAGGUCCC-GUAg -3'
miRNA:   3'- aGGCUag----CUUgUGGUUUUAGGGuCGU- -5'
14453 3' -49.7 NC_003521.1 + 171566 0.68 0.997323
Target:  5'- aCCGcuugccacGUCGGcCACCAucAUCaCCAGCAc -3'
miRNA:   3'- aGGC--------UAGCUuGUGGUuuUAG-GGUCGU- -5'
14453 3' -49.7 NC_003521.1 + 168095 0.71 0.984238
Target:  5'- aCCGGUCGGAUGCCcuccaacacgcgcccGGGGUCCUGGUg -3'
miRNA:   3'- aGGCUAGCUUGUGG---------------UUUUAGGGUCGu -5'
14453 3' -49.7 NC_003521.1 + 166177 0.68 0.996843
Target:  5'- gCCGAgCGGcGCuCCAGGGUCCCGcGCAc -3'
miRNA:   3'- aGGCUaGCU-UGuGGUUUUAGGGU-CGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.