miRNA display CGI


Results 1 - 20 of 307 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14468 3' -54 NC_003521.1 + 161819 0.66 0.981639
Target:  5'- --aGGCAGUAGaUACCagauucuccgacguuACCGUCGUCAUc -3'
miRNA:   3'- gagUCGUCGUC-GUGG---------------UGGUAGUAGUG- -5'
14468 3' -54 NC_003521.1 + 43049 0.66 0.980807
Target:  5'- -aCGGCA-CAGCugCGCCAUUAcUGCg -3'
miRNA:   3'- gaGUCGUcGUCGugGUGGUAGUaGUG- -5'
14468 3' -54 NC_003521.1 + 202388 0.66 0.980807
Target:  5'- -cCAGCAGCAGCAaCugCAacaGUUGCa -3'
miRNA:   3'- gaGUCGUCGUCGUgGugGUag-UAGUG- -5'
14468 3' -54 NC_003521.1 + 1438 0.66 0.980807
Target:  5'- aCUgGGCcgcgAGCuGCGCCGCCGguggCAgCACa -3'
miRNA:   3'- -GAgUCG----UCGuCGUGGUGGUa---GUaGUG- -5'
14468 3' -54 NC_003521.1 + 201665 0.66 0.980807
Target:  5'- aCUgGGCcgcgAGCuGCGCCGCCGguggCAgCACa -3'
miRNA:   3'- -GAgUCG----UCGuCGUGGUGGUa---GUaGUG- -5'
14468 3' -54 NC_003521.1 + 172287 0.66 0.980807
Target:  5'- gUUGGCGGCcGCuGCCGCCGUCcgguGUCGg -3'
miRNA:   3'- gAGUCGUCGuCG-UGGUGGUAG----UAGUg -5'
14468 3' -54 NC_003521.1 + 131197 0.66 0.980807
Target:  5'- --gAGCGGCGGC-UCAUCuUCAUCAUc -3'
miRNA:   3'- gagUCGUCGUCGuGGUGGuAGUAGUG- -5'
14468 3' -54 NC_003521.1 + 100446 0.66 0.980807
Target:  5'- gCUCGGgAGCAGgGCCGCCgaagaagaGUgGUgACg -3'
miRNA:   3'- -GAGUCgUCGUCgUGGUGG--------UAgUAgUG- -5'
14468 3' -54 NC_003521.1 + 11688 0.66 0.980807
Target:  5'- -aCAGaUAGCuGCACCACCGgcUCAUUc- -3'
miRNA:   3'- gaGUC-GUCGuCGUGGUGGU--AGUAGug -5'
14468 3' -54 NC_003521.1 + 212072 0.66 0.980807
Target:  5'- --gGGCGGUGGCGCgGCCcgCG-CGCg -3'
miRNA:   3'- gagUCGUCGUCGUGgUGGuaGUaGUG- -5'
14468 3' -54 NC_003521.1 + 2160 0.66 0.980807
Target:  5'- -cCAGCAGCAGCAaCugCAacaGUUGCa -3'
miRNA:   3'- gaGUCGUCGUCGUgGugGUag-UAGUG- -5'
14468 3' -54 NC_003521.1 + 172472 0.66 0.980807
Target:  5'- -cCGGCAGCGGUGC-GCCGUCggCGg -3'
miRNA:   3'- gaGUCGUCGUCGUGgUGGUAGuaGUg -5'
14468 3' -54 NC_003521.1 + 64625 0.66 0.980807
Target:  5'- uUCGGCcGCAGguCUucgacGCCGUCAacUCGCu -3'
miRNA:   3'- gAGUCGuCGUCguGG-----UGGUAGU--AGUG- -5'
14468 3' -54 NC_003521.1 + 79329 0.66 0.980807
Target:  5'- -gCAGCaAGCAGCGCgACgAUCGccgaUCAUc -3'
miRNA:   3'- gaGUCG-UCGUCGUGgUGgUAGU----AGUG- -5'
14468 3' -54 NC_003521.1 + 202605 0.66 0.980807
Target:  5'- cCUCGGCcccuacauCGGCGCCAUcguccgcuaCAUCGUCGCc -3'
miRNA:   3'- -GAGUCGuc------GUCGUGGUG---------GUAGUAGUG- -5'
14468 3' -54 NC_003521.1 + 207548 0.66 0.980807
Target:  5'- gCUCucGCAGCuGCugCACgAUCG-CGCc -3'
miRNA:   3'- -GAGu-CGUCGuCGugGUGgUAGUaGUG- -5'
14468 3' -54 NC_003521.1 + 124875 0.66 0.980807
Target:  5'- -gCGGCGGCAGCAggCACagcgCGUCGCc -3'
miRNA:   3'- gaGUCGUCGUCGUg-GUGgua-GUAGUG- -5'
14468 3' -54 NC_003521.1 + 214942 0.66 0.980594
Target:  5'- -aCAGCgGGCAG-ACCAUCGUCcugggcgAUCACa -3'
miRNA:   3'- gaGUCG-UCGUCgUGGUGGUAG-------UAGUG- -5'
14468 3' -54 NC_003521.1 + 28309 0.66 0.978603
Target:  5'- -gCAGCGGCAGCgACC-CCGg---CGCg -3'
miRNA:   3'- gaGUCGUCGUCG-UGGuGGUaguaGUG- -5'
14468 3' -54 NC_003521.1 + 184336 0.66 0.978603
Target:  5'- gUCAGCcGCAGUACUGCC-UCuUCGg -3'
miRNA:   3'- gAGUCGuCGUCGUGGUGGuAGuAGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.