miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14468 5' -53.7 NC_003521.1 + 197304 0.66 0.992621
Target:  5'- uCGACggGAgaggGGGCGGcagGCGCUGaCGGa -3'
miRNA:   3'- -GCUGuaCUa---CCUGCUa--CGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 46181 0.66 0.992621
Target:  5'- aGugGUGAUGGgcugcACGGUGCuGgUGUCGu -3'
miRNA:   3'- gCugUACUACC-----UGCUACG-CgGCAGCu -5'
14468 5' -53.7 NC_003521.1 + 65702 0.66 0.992621
Target:  5'- aGGCAaGAaGGACaGcgGCGCCG-CGGc -3'
miRNA:   3'- gCUGUaCUaCCUG-CuaCGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 164514 0.66 0.992621
Target:  5'- gGGCGUGAcGcGCGAcGUGCUGUCGu -3'
miRNA:   3'- gCUGUACUaCcUGCUaCGCGGCAGCu -5'
14468 5' -53.7 NC_003521.1 + 169715 0.66 0.992522
Target:  5'- cCGACGUcccccaaGAgcGACG-UGCGUCGUCGAc -3'
miRNA:   3'- -GCUGUA-------CUacCUGCuACGCGGCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 107241 0.66 0.992522
Target:  5'- cCGuAgAUGGUGGACGGgguuugauugUGCGCCaccugguguguguGUCGGa -3'
miRNA:   3'- -GC-UgUACUACCUGCU----------ACGCGG-------------CAGCU- -5'
14468 5' -53.7 NC_003521.1 + 35809 0.66 0.992013
Target:  5'- aCGGCGgcGUGGGCGAgaaccuggcggugcGCGCCGagGAu -3'
miRNA:   3'- -GCUGUacUACCUGCUa-------------CGCGGCagCU- -5'
14468 5' -53.7 NC_003521.1 + 134177 0.66 0.991585
Target:  5'- uGGcCAUGAUGacGGCGAUGaugagGUCGUCGGa -3'
miRNA:   3'- gCU-GUACUAC--CUGCUACg----CGGCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 190579 0.66 0.991585
Target:  5'- aCGGCGUGAUcgaGGGCGAggagugGCcCCG-CGAc -3'
miRNA:   3'- -GCUGUACUA---CCUGCUa-----CGcGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 164435 0.66 0.991585
Target:  5'- uCGGCAaGGUGGAgG--GCGCCG-CGGg -3'
miRNA:   3'- -GCUGUaCUACCUgCuaCGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 29987 0.66 0.991585
Target:  5'- gGACGgaggGAggGGACGA-GCGCCacggaccgcuGUCGGa -3'
miRNA:   3'- gCUGUa---CUa-CCUGCUaCGCGG----------CAGCU- -5'
14468 5' -53.7 NC_003521.1 + 15782 0.66 0.991585
Target:  5'- gCGACcaguUGuUGGACGAcgugaucugcUGCGCCGagCGGc -3'
miRNA:   3'- -GCUGu---ACuACCUGCU----------ACGCGGCa-GCU- -5'
14468 5' -53.7 NC_003521.1 + 240079 0.66 0.990438
Target:  5'- cCGGCGUGGggcuugcacgUGGugGGguUGUGCaCGUUGGg -3'
miRNA:   3'- -GCUGUACU----------ACCugCU--ACGCG-GCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 195142 0.66 0.990438
Target:  5'- aCGACAUGAgggccUGGAuCGAgauuuuacuuaGCGUCGUCa- -3'
miRNA:   3'- -GCUGUACU-----ACCU-GCUa----------CGCGGCAGcu -5'
14468 5' -53.7 NC_003521.1 + 224434 0.66 0.990438
Target:  5'- -uGCGUGGUGGGCGAgcgguccaggUGCGUC-UUGAc -3'
miRNA:   3'- gcUGUACUACCUGCU----------ACGCGGcAGCU- -5'
14468 5' -53.7 NC_003521.1 + 157269 0.66 0.990438
Target:  5'- uCGACGucaaccUGGUGGGCcccGUGUGCC-UCGAu -3'
miRNA:   3'- -GCUGU------ACUACCUGc--UACGCGGcAGCU- -5'
14468 5' -53.7 NC_003521.1 + 171396 0.66 0.990438
Target:  5'- gCGACuccaccGUGGugGugcGCGCCGUCa- -3'
miRNA:   3'- -GCUGuac---UACCugCua-CGCGGCAGcu -5'
14468 5' -53.7 NC_003521.1 + 18889 0.66 0.990438
Target:  5'- gCGACGa---GGACGAgGCGCCG-CGGc -3'
miRNA:   3'- -GCUGUacuaCCUGCUaCGCGGCaGCU- -5'
14468 5' -53.7 NC_003521.1 + 39852 0.66 0.990438
Target:  5'- cCGGCGUGGggcuugcacgUGGugGGguUGUGCaCGUUGGg -3'
miRNA:   3'- -GCUGUACU----------ACCugCU--ACGCG-GCAGCU- -5'
14468 5' -53.7 NC_003521.1 + 218718 0.66 0.989171
Target:  5'- gCGGCGgcGgcGGGCGAgaaGCGgCGUCGGg -3'
miRNA:   3'- -GCUGUa-CuaCCUGCUa--CGCgGCAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.