miRNA display CGI


Results 1 - 20 of 551 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14479 5' -61.6 NC_003521.1 + 201820 0.66 0.836049
Target:  5'- cGGcCGUGcaGCGccacauccaccaGCGCCUGUGCUGCg -3'
miRNA:   3'- -CCuGCAC--CGCuug---------CGCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 1593 0.66 0.836049
Target:  5'- cGGcCGUGcaGCGccacauccaccaGCGCCUGUGCUGCg -3'
miRNA:   3'- -CCuGCAC--CGCuug---------CGCGGGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 156139 0.66 0.836049
Target:  5'- uGGAgGUgugcacgcagcugcuGGCGcugcuGCGaCGCCUGUGCgGCa -3'
miRNA:   3'- -CCUgCA---------------CCGCu----UGC-GCGGGCGCGgCG- -5'
14479 5' -61.6 NC_003521.1 + 163407 0.66 0.833
Target:  5'- cGGcCGUGGCcc-CGuCGUCgGCuGCCGCu -3'
miRNA:   3'- -CCuGCACCGcuuGC-GCGGgCG-CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 47433 0.66 0.833
Target:  5'- cGGGCcagGGCacAUGCaGCCgGgCGCCGCa -3'
miRNA:   3'- -CCUGca-CCGcuUGCG-CGGgC-GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 93907 0.66 0.833
Target:  5'- uGGGCGUGGCuGGucgcggcaagcgGCGacuaccgcUGCCCGcCGUCGUc -3'
miRNA:   3'- -CCUGCACCG-CU------------UGC--------GCGGGC-GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 184487 0.66 0.833
Target:  5'- ---gGUGuGCGcccuGCGCGgCCGCGCCu- -3'
miRNA:   3'- ccugCAC-CGCu---UGCGCgGGCGCGGcg -5'
14479 5' -61.6 NC_003521.1 + 153425 0.66 0.833
Target:  5'- cGGCGUGGUcagcagcagccGGuCGCGCUCGUagGCCaGCg -3'
miRNA:   3'- cCUGCACCG-----------CUuGCGCGGGCG--CGG-CG- -5'
14479 5' -61.6 NC_003521.1 + 210106 0.66 0.833
Target:  5'- cGGAgGUcacGCGAcAUGaGCCCgcgGCGCCGCg -3'
miRNA:   3'- -CCUgCAc--CGCU-UGCgCGGG---CGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 240451 0.66 0.833
Target:  5'- -cGCGUgaGGCGGGCaGCGgUCGCaggcGCCGCc -3'
miRNA:   3'- ccUGCA--CCGCUUG-CGCgGGCG----CGGCG- -5'
14479 5' -61.6 NC_003521.1 + 177665 0.66 0.833
Target:  5'- gGGGCG-GcGCGucgauCGUcaGCCCGCGCaGCu -3'
miRNA:   3'- -CCUGCaC-CGCuu---GCG--CGGGCGCGgCG- -5'
14479 5' -61.6 NC_003521.1 + 104621 0.66 0.833
Target:  5'- uGGACaUGGacugcgagaaGAGCGCcuucauGCUCGaCGCCGCc -3'
miRNA:   3'- -CCUGcACCg---------CUUGCG------CGGGC-GCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 169450 0.66 0.833
Target:  5'- cGGCGUcGGCGGcgGCGgGUUCGuCGCCagGCg -3'
miRNA:   3'- cCUGCA-CCGCU--UGCgCGGGC-GCGG--CG- -5'
14479 5' -61.6 NC_003521.1 + 138032 0.66 0.833
Target:  5'- cGAgcUGGCG-GC-CGCCgGCGCCGUc -3'
miRNA:   3'- cCUgcACCGCuUGcGCGGgCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 115713 0.66 0.833
Target:  5'- uGACGgcGGCcGugGUGCCCaucccgcaGCGCCuGCa -3'
miRNA:   3'- cCUGCa-CCGcUugCGCGGG--------CGCGG-CG- -5'
14479 5' -61.6 NC_003521.1 + 152315 0.66 0.833
Target:  5'- -cACGgcuGCGAGuCGCuGCgCGUGCCGCu -3'
miRNA:   3'- ccUGCac-CGCUU-GCG-CGgGCGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 91166 0.66 0.833
Target:  5'- cGACGUuucagGGCGcAUGCGCCUcuggaaGCGguaCCGCg -3'
miRNA:   3'- cCUGCA-----CCGCuUGCGCGGG------CGC---GGCG- -5'
14479 5' -61.6 NC_003521.1 + 136537 0.66 0.833
Target:  5'- cGGAUcUGGCcuuugaGGCGCGCUU-CGCCGCc -3'
miRNA:   3'- -CCUGcACCGc-----UUGCGCGGGcGCGGCG- -5'
14479 5' -61.6 NC_003521.1 + 87144 0.66 0.833
Target:  5'- cGAgGUGuuggaGCGGGCGCaGUUCGUGCgCGCg -3'
miRNA:   3'- cCUgCAC-----CGCUUGCG-CGGGCGCG-GCG- -5'
14479 5' -61.6 NC_003521.1 + 40223 0.66 0.833
Target:  5'- -cGCGUgaGGCGGGCaGCGgUCGCaggcGCCGCc -3'
miRNA:   3'- ccUGCA--CCGCUUG-CGCgGGCG----CGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.