miRNA display CGI


Results 1 - 20 of 134 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14480 3' -57.6 NC_003521.1 + 92304 0.65 0.939931
Target:  5'- aGGCGCgggaggagGCG-CAGccGCGGCAUGGg -3'
miRNA:   3'- -UCGCGaagga---CGCaGUC--UGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 160773 0.66 0.936267
Target:  5'- cGCGCgugCCgccgGCGgCAcGCgGGCGCGGg -3'
miRNA:   3'- uCGCGaa-GGa---CGCaGUcUG-CCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 55018 0.66 0.936267
Target:  5'- aGGCGCagcgCCaGCGUCGG-CGGCucCGa -3'
miRNA:   3'- -UCGCGaa--GGaCGCAGUCuGCCGu-GCc -5'
14480 3' -57.6 NC_003521.1 + 104553 0.66 0.936267
Target:  5'- cGCGCUccaccaccUCCUGaaucaCGUCGGcguaGCGGC-CGGc -3'
miRNA:   3'- uCGCGA--------AGGAC-----GCAGUC----UGCCGuGCC- -5'
14480 3' -57.6 NC_003521.1 + 166116 0.66 0.936267
Target:  5'- -aCGCgggCCUGCuUCAgGGCGGC-CGGc -3'
miRNA:   3'- ucGCGaa-GGACGcAGU-CUGCCGuGCC- -5'
14480 3' -57.6 NC_003521.1 + 197828 0.66 0.936267
Target:  5'- cGCGCgacacggccgUCUGCaggucGUCGGugGGCGcCGGc -3'
miRNA:   3'- uCGCGaa--------GGACG-----CAGUCugCCGU-GCC- -5'
14480 3' -57.6 NC_003521.1 + 98404 0.66 0.9358
Target:  5'- cGGCGCUgcugcuguuauugUCCgGUGgu-GGCGGgGCGGg -3'
miRNA:   3'- -UCGCGA-------------AGGaCGCaguCUGCCgUGCC- -5'
14480 3' -57.6 NC_003521.1 + 91762 0.66 0.9358
Target:  5'- gAGCGCggCC-GCGUCgaagcccAGcGCGgGCACGGc -3'
miRNA:   3'- -UCGCGaaGGaCGCAG-------UC-UGC-CGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 25555 0.66 0.931492
Target:  5'- cGGaCGCUg-UUGUG-CAGGCGGcCGCGGg -3'
miRNA:   3'- -UC-GCGAagGACGCaGUCUGCC-GUGCC- -5'
14480 3' -57.6 NC_003521.1 + 76177 0.66 0.931492
Target:  5'- cGuCGCgggCCUGCGUgAGGCGcCACaGGa -3'
miRNA:   3'- uC-GCGaa-GGACGCAgUCUGCcGUG-CC- -5'
14480 3' -57.6 NC_003521.1 + 76699 0.66 0.931492
Target:  5'- cAGCGgaUUCCUGCGaauUCGGAggagGGaCACGGc -3'
miRNA:   3'- -UCGCg-AAGGACGC---AGUCUg---CC-GUGCC- -5'
14480 3' -57.6 NC_003521.1 + 210555 0.66 0.931492
Target:  5'- gAGCGCgcccgCCaGgGUCAGcUGGcCACGGc -3'
miRNA:   3'- -UCGCGaa---GGaCgCAGUCuGCC-GUGCC- -5'
14480 3' -57.6 NC_003521.1 + 135904 0.66 0.931492
Target:  5'- cGCGCUcgucgucaUCgU-CGUCGGACGGCAgcaGGc -3'
miRNA:   3'- uCGCGA--------AGgAcGCAGUCUGCCGUg--CC- -5'
14480 3' -57.6 NC_003521.1 + 168399 0.66 0.931492
Target:  5'- uGGCGUUgccgCCguugGUGgcuagggCGGGCGGCAgGGc -3'
miRNA:   3'- -UCGCGAa---GGa---CGCa------GUCUGCCGUgCC- -5'
14480 3' -57.6 NC_003521.1 + 187851 0.66 0.928523
Target:  5'- cGGC-CUUCCucaccgccuguugcaUGgCGgucaccaccUCGGGCGGCACGGg -3'
miRNA:   3'- -UCGcGAAGG---------------AC-GC---------AGUCUGCCGUGCC- -5'
14480 3' -57.6 NC_003521.1 + 38224 0.66 0.926499
Target:  5'- aGGCGCagggcggCCU-CGgCGGGCGGgGCGGa -3'
miRNA:   3'- -UCGCGaa-----GGAcGCaGUCUGCCgUGCC- -5'
14480 3' -57.6 NC_003521.1 + 238452 0.66 0.926499
Target:  5'- aGGCGCagggcggCCU-CGgCGGGCGGgGCGGa -3'
miRNA:   3'- -UCGCGaa-----GGAcGCaGUCUGCCgUGCC- -5'
14480 3' -57.6 NC_003521.1 + 155898 0.66 0.926499
Target:  5'- gAGCGCacgcCCUGCGagCAGGcCGGCuACGc -3'
miRNA:   3'- -UCGCGaa--GGACGCa-GUCU-GCCG-UGCc -5'
14480 3' -57.6 NC_003521.1 + 50779 0.66 0.926499
Target:  5'- cGCGCggcggUCCUG-GUCGauCGGCgACGGu -3'
miRNA:   3'- uCGCGa----AGGACgCAGUcuGCCG-UGCC- -5'
14480 3' -57.6 NC_003521.1 + 171650 0.66 0.926499
Target:  5'- uAGCGCg-CCgcggcggGCGUCGGgagcgucgGCGGCAUGa -3'
miRNA:   3'- -UCGCGaaGGa------CGCAGUC--------UGCCGUGCc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.