miRNA display CGI


Results 1 - 20 of 623 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14493 3' -64 NC_003521.1 + 164681 0.66 0.732991
Target:  5'- gCGCCgugugcgcgucgaggACCugguGCUGUCgUCGGUGCUGUCc -3'
miRNA:   3'- gGCGG---------------UGG----UGGCGGgAGCCACGGCGG- -5'
14493 3' -64 NC_003521.1 + 1375 0.66 0.729421
Target:  5'- -gGCCACCGCUguccccgaGCCCgCGcUGCUGCg -3'
miRNA:   3'- ggCGGUGGUGG--------CGGGaGCcACGGCGg -5'
14493 3' -64 NC_003521.1 + 201602 0.66 0.729421
Target:  5'- -gGCCACCGCUguccccgaGCCCgCGcUGCUGCg -3'
miRNA:   3'- ggCGGUGGUGG--------CGGGaGCcACGGCGg -5'
14493 3' -64 NC_003521.1 + 55270 0.66 0.729421
Target:  5'- uCUGCgaACagACUGCCCUUGGUGgcuCCGUCa -3'
miRNA:   3'- -GGCGg-UGg-UGGCGGGAGCCAC---GGCGG- -5'
14493 3' -64 NC_003521.1 + 121664 0.66 0.729421
Target:  5'- gCGCCgGCCugUuUCCUCGGaggGCCGUg -3'
miRNA:   3'- gGCGG-UGGugGcGGGAGCCa--CGGCGg -5'
14493 3' -64 NC_003521.1 + 53504 0.66 0.729421
Target:  5'- gCCGCUGCUgcggcgucgcaGCgGCCgaUGGUGCUGUCc -3'
miRNA:   3'- -GGCGGUGG-----------UGgCGGgaGCCACGGCGG- -5'
14493 3' -64 NC_003521.1 + 74455 0.66 0.729421
Target:  5'- gUGCgCACCguguucagcgaGCaCGUCCUgggcuucgagcUGGUGCCGCCc -3'
miRNA:   3'- gGCG-GUGG-----------UG-GCGGGA-----------GCCACGGCGG- -5'
14493 3' -64 NC_003521.1 + 180912 0.66 0.729421
Target:  5'- -aGcCCACCuuguacugcgGCCGCUCgaugguggcgCGGUGCCGUa -3'
miRNA:   3'- ggC-GGUGG----------UGGCGGGa---------GCCACGGCGg -5'
14493 3' -64 NC_003521.1 + 235323 0.66 0.729421
Target:  5'- aCgGCUA-CACCGCCUcUGGUGUuucUGCCg -3'
miRNA:   3'- -GgCGGUgGUGGCGGGaGCCACG---GCGG- -5'
14493 3' -64 NC_003521.1 + 38922 0.66 0.729421
Target:  5'- gCCGCCGCCuGCUGUUCggucaucggCGGUGUgGUa -3'
miRNA:   3'- -GGCGGUGG-UGGCGGGa--------GCCACGgCGg -5'
14493 3' -64 NC_003521.1 + 13195 0.66 0.729421
Target:  5'- gUGCCGCUcggGCCGCCgugUUGGaggGCCGaCCg -3'
miRNA:   3'- gGCGGUGG---UGGCGGg--AGCCa--CGGC-GG- -5'
14493 3' -64 NC_003521.1 + 114835 0.66 0.729421
Target:  5'- aCGCgCACCgugcucauGCUGCgCCUUaGcGUGCUGCCg -3'
miRNA:   3'- gGCG-GUGG--------UGGCG-GGAG-C-CACGGCGG- -5'
14493 3' -64 NC_003521.1 + 13881 0.66 0.729421
Target:  5'- gCCGCCAuggauuUCGCCgggggGCCCggcgCGGaggggGCCGCg -3'
miRNA:   3'- -GGCGGU------GGUGG-----CGGGa---GCCa----CGGCGg -5'
14493 3' -64 NC_003521.1 + 156413 0.66 0.729421
Target:  5'- cCUGCCGCUggucaccuacaACCGCCgUaacgUGGUGCUcaaGCCc -3'
miRNA:   3'- -GGCGGUGG-----------UGGCGGgA----GCCACGG---CGG- -5'
14493 3' -64 NC_003521.1 + 71253 0.66 0.729421
Target:  5'- aCGCCACgAucCCGCCaacaUCGGcggaggcggggGCCGCg -3'
miRNA:   3'- gGCGGUGgU--GGCGGg---AGCCa----------CGGCGg -5'
14493 3' -64 NC_003521.1 + 185773 0.66 0.728527
Target:  5'- -gGCCGCgAUggagcgcaagacgCGUCuCUCGGaGCCGCCg -3'
miRNA:   3'- ggCGGUGgUG-------------GCGG-GAGCCaCGGCGG- -5'
14493 3' -64 NC_003521.1 + 118947 0.66 0.726737
Target:  5'- cCCGUCaggGCCAgCGCCCgagacagucccuccUCGGUGuCCGaCUc -3'
miRNA:   3'- -GGCGG---UGGUgGCGGG--------------AGCCAC-GGC-GG- -5'
14493 3' -64 NC_003521.1 + 190983 0.66 0.72135
Target:  5'- aCCGCCACCuggacgGCCGUCUgcacggcgcacugcaCGGcGCCcaGCCa -3'
miRNA:   3'- -GGCGGUGG------UGGCGGGa--------------GCCaCGG--CGG- -5'
14493 3' -64 NC_003521.1 + 28260 0.66 0.72045
Target:  5'- aCCGCUcUCACCaCCCUCccccugGCCGUCg -3'
miRNA:   3'- -GGCGGuGGUGGcGGGAGcca---CGGCGG- -5'
14493 3' -64 NC_003521.1 + 41446 0.66 0.72045
Target:  5'- aCCcCCGCCGCCGUCUacaccaCGGUgGUgGCCc -3'
miRNA:   3'- -GGcGGUGGUGGCGGGa-----GCCA-CGgCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.