miRNA display CGI


Results 1 - 20 of 426 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14494 3' -56.6 NC_003521.1 + 223787 0.66 0.939817
Target:  5'- cGUUACcGcCGugGGCCGCCagacgacgggccugCGCCGCc -3'
miRNA:   3'- -CAAUGuC-GUugUCGGCGGga------------GCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 110527 0.66 0.939354
Target:  5'- -aUGC-GCGGC-GCCGCggCCUCGCC-Ca -3'
miRNA:   3'- caAUGuCGUUGuCGGCG--GGAGCGGuG- -5'
14494 3' -56.6 NC_003521.1 + 116720 0.66 0.939354
Target:  5'- --cACAGCGACGcgcugcuucCCGCCCaCGCCGu -3'
miRNA:   3'- caaUGUCGUUGUc--------GGCGGGaGCGGUg -5'
14494 3' -56.6 NC_003521.1 + 118005 0.66 0.939354
Target:  5'- --gACGGUAGCGGCgGCgUgUCGCUGCc -3'
miRNA:   3'- caaUGUCGUUGUCGgCG-GgAGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 72469 0.66 0.939354
Target:  5'- -cUGCcGCuACGcGCCGCuCUUCGCCAg -3'
miRNA:   3'- caAUGuCGuUGU-CGGCG-GGAGCGGUg -5'
14494 3' -56.6 NC_003521.1 + 124963 0.66 0.939354
Target:  5'- -gUGCAGCAGgaucUGGuuGCCCUccaCGCgGCg -3'
miRNA:   3'- caAUGUCGUU----GUCggCGGGA---GCGgUG- -5'
14494 3' -56.6 NC_003521.1 + 63140 0.66 0.939354
Target:  5'- -aUGgAGCAGCAGCUGCgcgggcugacgaUCgacgCGCCGCc -3'
miRNA:   3'- caAUgUCGUUGUCGGCG------------GGa---GCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 127325 0.66 0.939354
Target:  5'- cGUUGguCAGCGGCuGCCGgUCg-GCCACg -3'
miRNA:   3'- -CAAU--GUCGUUGuCGGCgGGagCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 205789 0.66 0.939354
Target:  5'- --cACGGCAugAGCgUGCCCaaccgCGuCCGCc -3'
miRNA:   3'- caaUGUCGUugUCG-GCGGGa----GC-GGUG- -5'
14494 3' -56.6 NC_003521.1 + 16792 0.66 0.939354
Target:  5'- --aGgGGCGACGGCgccCGCCC-CGaCCGCc -3'
miRNA:   3'- caaUgUCGUUGUCG---GCGGGaGC-GGUG- -5'
14494 3' -56.6 NC_003521.1 + 43276 0.66 0.939354
Target:  5'- --aGgAGCucGCcGCCGCUCUCGuCCGCc -3'
miRNA:   3'- caaUgUCGu-UGuCGGCGGGAGC-GGUG- -5'
14494 3' -56.6 NC_003521.1 + 100618 0.66 0.937478
Target:  5'- --cACGGCGACucGGCCGCCaagauccaggagCGCUAUg -3'
miRNA:   3'- caaUGUCGUUG--UCGGCGGga----------GCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 49828 0.66 0.934596
Target:  5'- -gUGCAGUgcgccgugcaGACGGCCGUCCagGUgGCg -3'
miRNA:   3'- caAUGUCG----------UUGUCGGCGGGagCGgUG- -5'
14494 3' -56.6 NC_003521.1 + 89846 0.66 0.934596
Target:  5'- ---gUAGCcgauguCGGCCGCCagCGCCGCg -3'
miRNA:   3'- caauGUCGuu----GUCGGCGGgaGCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 103524 0.66 0.934596
Target:  5'- --cGC-GCAGCAGCCGCgCCaC-CCGCa -3'
miRNA:   3'- caaUGuCGUUGUCGGCG-GGaGcGGUG- -5'
14494 3' -56.6 NC_003521.1 + 183882 0.66 0.934596
Target:  5'- cGUUACucGGCAuCAGCUGCaga-GCCACg -3'
miRNA:   3'- -CAAUG--UCGUuGUCGGCGggagCGGUG- -5'
14494 3' -56.6 NC_003521.1 + 3665 0.66 0.934596
Target:  5'- -cUGCcuCGGCGGCCGggaCCCUCGUCGg -3'
miRNA:   3'- caAUGucGUUGUCGGC---GGGAGCGGUg -5'
14494 3' -56.6 NC_003521.1 + 203355 0.66 0.934596
Target:  5'- -cUGCGGCAccACGGUgGCCCgcgCGCgAg -3'
miRNA:   3'- caAUGUCGU--UGUCGgCGGGa--GCGgUg -5'
14494 3' -56.6 NC_003521.1 + 44005 0.66 0.934596
Target:  5'- --gGCcuGCucaaccACGGCCuGCCCUCGCCcACc -3'
miRNA:   3'- caaUGu-CGu-----UGUCGG-CGGGAGCGG-UG- -5'
14494 3' -56.6 NC_003521.1 + 69842 0.66 0.934596
Target:  5'- --aGCGGCAggucgaugacgcGCcgaugaGGCCGCCgCgcagCGCCACg -3'
miRNA:   3'- caaUGUCGU------------UG------UCGGCGG-Ga---GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.