miRNA display CGI


Results 1 - 20 of 105 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14494 5' -55 NC_003521.1 + 186402 0.65 0.972449
Target:  5'- gCGGcGGCAGCAGUGCagguagaucaGGUAgCACaCGa -3'
miRNA:   3'- -GUCaCCGUCGUCAUGg---------UCAUgGUG-GU- -5'
14494 5' -55 NC_003521.1 + 98316 0.65 0.972449
Target:  5'- aAGUGGUGGCGGcgGCCAcgacggugGUugCGCUg -3'
miRNA:   3'- gUCACCGUCGUCa-UGGU--------CAugGUGGu -5'
14494 5' -55 NC_003521.1 + 77042 0.65 0.972449
Target:  5'- gCGGUGGUGGCGccgcUACCGuuguUGCCGCCGc -3'
miRNA:   3'- -GUCACCGUCGUc---AUGGUc---AUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 120752 0.65 0.972449
Target:  5'- aGGUGGCcGCcuGGaUGCCGGccUGCCACUg -3'
miRNA:   3'- gUCACCGuCG--UC-AUGGUC--AUGGUGGu -5'
14494 5' -55 NC_003521.1 + 114511 0.65 0.972449
Target:  5'- -cGUGGCcGCcGUGCCcaccGCCGCCAc -3'
miRNA:   3'- guCACCGuCGuCAUGGuca-UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 217337 0.65 0.972449
Target:  5'- aCGGUGGCGGaCGGcgGCCGGUccucguACUugCu -3'
miRNA:   3'- -GUCACCGUC-GUCa-UGGUCA------UGGugGu -5'
14494 5' -55 NC_003521.1 + 124788 0.66 0.970777
Target:  5'- cCAGUGGCaccgggaugacccagGGCAGcACCAGcucCCACUu -3'
miRNA:   3'- -GUCACCG---------------UCGUCaUGGUCau-GGUGGu -5'
14494 5' -55 NC_003521.1 + 168024 0.66 0.969623
Target:  5'- uGGUGGUGGUAggcGUGCgGGUcuuggagcuguGCCGCCGa -3'
miRNA:   3'- gUCACCGUCGU---CAUGgUCA-----------UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 135753 0.66 0.969623
Target:  5'- uGGUGGCGGCGGUG--GG-AUCGCCc -3'
miRNA:   3'- gUCACCGUCGUCAUggUCaUGGUGGu -5'
14494 5' -55 NC_003521.1 + 150167 0.66 0.969623
Target:  5'- cCGG-GGCguguccacuaggGGguGUACCuaGGUACCGCCc -3'
miRNA:   3'- -GUCaCCG------------UCguCAUGG--UCAUGGUGGu -5'
14494 5' -55 NC_003521.1 + 188402 0.66 0.969623
Target:  5'- gCAGUGGaCAGCGucGUGCUAcucGUACUGCUg -3'
miRNA:   3'- -GUCACC-GUCGU--CAUGGU---CAUGGUGGu -5'
14494 5' -55 NC_003521.1 + 63226 0.66 0.969623
Target:  5'- ---cGGCAGCGGaacgGCCGGaaccggcggcGCCGCCAc -3'
miRNA:   3'- gucaCCGUCGUCa---UGGUCa---------UGGUGGU- -5'
14494 5' -55 NC_003521.1 + 36075 0.66 0.969623
Target:  5'- aCAGggcGGCGGCGGcGCCuccAUCACCAc -3'
miRNA:   3'- -GUCa--CCGUCGUCaUGGucaUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 188130 0.66 0.967832
Target:  5'- uGGUGG-AGCGGcUggcaccgccgacgcuGCCGGUGCCGCUg -3'
miRNA:   3'- gUCACCgUCGUC-A---------------UGGUCAUGGUGGu -5'
14494 5' -55 NC_003521.1 + 97499 0.66 0.966597
Target:  5'- uCGGUGGCGGCuGUcucuACCGcggGCgACCAc -3'
miRNA:   3'- -GUCACCGUCGuCA----UGGUca-UGgUGGU- -5'
14494 5' -55 NC_003521.1 + 190584 0.66 0.966597
Target:  5'- --cUGGCAGCAGUucACCA--GCCAgCGg -3'
miRNA:   3'- gucACCGUCGUCA--UGGUcaUGGUgGU- -5'
14494 5' -55 NC_003521.1 + 126838 0.66 0.966597
Target:  5'- gGGUuGCAGcCGGUGCCcGgccgGCCGCCu -3'
miRNA:   3'- gUCAcCGUC-GUCAUGGuCa---UGGUGGu -5'
14494 5' -55 NC_003521.1 + 120959 0.66 0.966597
Target:  5'- gCAGggGGCggGGCGGuUugCGGU-CCGCCAg -3'
miRNA:   3'- -GUCa-CCG--UCGUC-AugGUCAuGGUGGU- -5'
14494 5' -55 NC_003521.1 + 131770 0.66 0.966283
Target:  5'- gCGGUGauccgcagcgagcGCAGCAggguGUACUGG-ACCACCAa -3'
miRNA:   3'- -GUCAC-------------CGUCGU----CAUGGUCaUGGUGGU- -5'
14494 5' -55 NC_003521.1 + 155664 0.66 0.965649
Target:  5'- gGGUGGCGGCGGa---GGUcuggacgauucaucGCCGCCGa -3'
miRNA:   3'- gUCACCGUCGUCauggUCA--------------UGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.