miRNA display CGI


Results 1 - 20 of 130 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 3' -55.2 NC_003521.1 + 191993 0.66 0.97593
Target:  5'- cCGCG-CGUCAGCgucgaGCAGCCgUucAUCGu -3'
miRNA:   3'- cGCGUgGCAGUCGa----UGUCGGgA--UAGC- -5'
14503 3' -55.2 NC_003521.1 + 209201 0.66 0.97593
Target:  5'- --cCACCGUCGGCcGCgguGGCCCUGcCa -3'
miRNA:   3'- cgcGUGGCAGUCGaUG---UCGGGAUaGc -5'
14503 3' -55.2 NC_003521.1 + 202552 0.66 0.97593
Target:  5'- uGCGCGCCGgccuccuggGGCUGCuGaCCCUGggccgCGu -3'
miRNA:   3'- -CGCGUGGCag-------UCGAUGuC-GGGAUa----GC- -5'
14503 3' -55.2 NC_003521.1 + 103226 0.66 0.97593
Target:  5'- aGCGCGCgGUaCAGgU-CGGCCUcguUGUCGu -3'
miRNA:   3'- -CGCGUGgCA-GUCgAuGUCGGG---AUAGC- -5'
14503 3' -55.2 NC_003521.1 + 16288 0.66 0.97593
Target:  5'- uGgGCGCCGUgGGUgccuacCGGCCCgg-CGg -3'
miRNA:   3'- -CgCGUGGCAgUCGau----GUCGGGauaGC- -5'
14503 3' -55.2 NC_003521.1 + 187325 0.66 0.97593
Target:  5'- uGCGaCGCCG-CAGCaGCGGCC---UCGa -3'
miRNA:   3'- -CGC-GUGGCaGUCGaUGUCGGgauAGC- -5'
14503 3' -55.2 NC_003521.1 + 26378 0.66 0.97593
Target:  5'- aGCGcCGCCGUCAucaacuuCUGCAGCaCC-GUCa -3'
miRNA:   3'- -CGC-GUGGCAGUc------GAUGUCG-GGaUAGc -5'
14503 3' -55.2 NC_003521.1 + 2324 0.66 0.97593
Target:  5'- uGCGCGCCGgccuccuggGGCUGCuGaCCCUGggccgCGu -3'
miRNA:   3'- -CGCGUGGCag-------UCGAUGuC-GGGAUa----GC- -5'
14503 3' -55.2 NC_003521.1 + 27013 0.66 0.97593
Target:  5'- cCGCACCGUgaugUGGCUGC-GCCgUuUCGg -3'
miRNA:   3'- cGCGUGGCA----GUCGAUGuCGGgAuAGC- -5'
14503 3' -55.2 NC_003521.1 + 221810 0.66 0.97593
Target:  5'- uGgGCuCCGUCGGCgggGCGGgCgUGUCu -3'
miRNA:   3'- -CgCGuGGCAGUCGa--UGUCgGgAUAGc -5'
14503 3' -55.2 NC_003521.1 + 76115 0.66 0.975191
Target:  5'- cCGCACCGcgucgucuucuucgUCAGCcgcCGGCCUcGUCGu -3'
miRNA:   3'- cGCGUGGC--------------AGUCGau-GUCGGGaUAGC- -5'
14503 3' -55.2 NC_003521.1 + 170144 0.66 0.975191
Target:  5'- gGCGCagacGCCGUCgguuuuccagcagcAGCUGCAGCaCCa---- -3'
miRNA:   3'- -CGCG----UGGCAG--------------UCGAUGUCG-GGauagc -5'
14503 3' -55.2 NC_003521.1 + 98802 0.66 0.973404
Target:  5'- cGCGCGCCGUCcacgucgaGGCguUGCAGCUgcUUGgcgCGg -3'
miRNA:   3'- -CGCGUGGCAG--------UCG--AUGUCGG--GAUa--GC- -5'
14503 3' -55.2 NC_003521.1 + 222106 0.66 0.973404
Target:  5'- cGC-CGCCGcCAGCgGCAGCCacagccggAUCGc -3'
miRNA:   3'- -CGcGUGGCaGUCGaUGUCGGga------UAGC- -5'
14503 3' -55.2 NC_003521.1 + 204830 0.66 0.973404
Target:  5'- cCGuCGCCGUC-GCUGaccaAGCCCgguUCGu -3'
miRNA:   3'- cGC-GUGGCAGuCGAUg---UCGGGau-AGC- -5'
14503 3' -55.2 NC_003521.1 + 44171 0.66 0.973404
Target:  5'- uGCGCACC--CAGCUggACGuGCUCUAcUCGg -3'
miRNA:   3'- -CGCGUGGcaGUCGA--UGU-CGGGAU-AGC- -5'
14503 3' -55.2 NC_003521.1 + 25784 0.66 0.973404
Target:  5'- gGgGCuCCacgCGGCUGCAGCCCaccAUCa -3'
miRNA:   3'- -CgCGuGGca-GUCGAUGUCGGGa--UAGc -5'
14503 3' -55.2 NC_003521.1 + 150977 0.66 0.973404
Target:  5'- gGCGCuggcgGCCGacaUCGGCUACGGCgUCUA-CGu -3'
miRNA:   3'- -CGCG-----UGGC---AGUCGAUGUCG-GGAUaGC- -5'
14503 3' -55.2 NC_003521.1 + 100658 0.66 0.973404
Target:  5'- cGCGUugCGUCGGCUGCGGaug-GUg- -3'
miRNA:   3'- -CGCGugGCAGUCGAUGUCgggaUAgc -5'
14503 3' -55.2 NC_003521.1 + 127896 0.66 0.973141
Target:  5'- aGCgGCACCGUCucGCUGuuGUCCUggcagugcgugaaGUCGa -3'
miRNA:   3'- -CG-CGUGGCAGu-CGAUguCGGGA-------------UAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.