miRNA display CGI


Results 1 - 20 of 342 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14503 5' -61.6 NC_003521.1 + 182040 0.66 0.808831
Target:  5'- aUGCGUCGUcGCCGgcgcgCGCCGcccuGCaGUGGCu -3'
miRNA:   3'- -ACGCGGCGcCGGCa----GUGGC----UG-CACUG- -5'
14503 5' -61.6 NC_003521.1 + 105578 0.66 0.808831
Target:  5'- -cCGCCGcCGuGUCGUCGCCGcCGccGGCg -3'
miRNA:   3'- acGCGGC-GC-CGGCAGUGGCuGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 105935 0.66 0.808831
Target:  5'- cUGCG-UGUGGCCGgCGCgGAUGaUGACc -3'
miRNA:   3'- -ACGCgGCGCCGGCaGUGgCUGC-ACUG- -5'
14503 5' -61.6 NC_003521.1 + 87709 0.66 0.808831
Target:  5'- aGcCGCCuGCuGCCGUCGCgcgcgcccggCGGCGUGGu -3'
miRNA:   3'- aC-GCGG-CGcCGGCAGUG----------GCUGCACUg -5'
14503 5' -61.6 NC_003521.1 + 6050 0.66 0.808831
Target:  5'- cGUGCCccaGCGGCCc-CGCagGGCGUGAUc -3'
miRNA:   3'- aCGCGG---CGCCGGcaGUGg-CUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 177811 0.66 0.808831
Target:  5'- gGCGUCGUGGgCGcCGCCGGCu---- -3'
miRNA:   3'- aCGCGGCGCCgGCaGUGGCUGcacug -5'
14503 5' -61.6 NC_003521.1 + 109726 0.66 0.808831
Target:  5'- cGCGCCGCcccGCCGUCcggaGCCcGCGcGAg -3'
miRNA:   3'- aCGCGGCGc--CGGCAG----UGGcUGCaCUg -5'
14503 5' -61.6 NC_003521.1 + 43839 0.66 0.808831
Target:  5'- cGCcgGCCGCGGgcCCGUCACaGGCGccccGGCc -3'
miRNA:   3'- aCG--CGGCGCC--GGCAGUGgCUGCa---CUG- -5'
14503 5' -61.6 NC_003521.1 + 26443 0.66 0.808831
Target:  5'- gGCGCuguuCGUGGCCuG-CAaCGGCGUGGCc -3'
miRNA:   3'- aCGCG----GCGCCGG-CaGUgGCUGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 73835 0.66 0.808831
Target:  5'- cGCGCUGaCGGCCGagGgaaCGACGUcaaccacagcGACg -3'
miRNA:   3'- aCGCGGC-GCCGGCagUg--GCUGCA----------CUG- -5'
14503 5' -61.6 NC_003521.1 + 212503 0.66 0.808831
Target:  5'- gGCGguCCGCaGGCCG-CGCCGGgGUcGCu -3'
miRNA:   3'- aCGC--GGCG-CCGGCaGUGGCUgCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 107623 0.66 0.808831
Target:  5'- cGCGCCccgaccGCGGUCGUC-CCGAuCGccgaGGCc -3'
miRNA:   3'- aCGCGG------CGCCGGCAGuGGCU-GCa---CUG- -5'
14503 5' -61.6 NC_003521.1 + 169606 0.66 0.808831
Target:  5'- aGUGCCGCGGuuGUagggGACGaGGCg -3'
miRNA:   3'- aCGCGGCGCCggCAguggCUGCaCUG- -5'
14503 5' -61.6 NC_003521.1 + 169329 0.66 0.808831
Target:  5'- aGCGUCGCGGCCGg---CGugGUuuCg -3'
miRNA:   3'- aCGCGGCGCCGGCagugGCugCAcuG- -5'
14503 5' -61.6 NC_003521.1 + 141292 0.66 0.808831
Target:  5'- -cCGCUGCGGCacgGUCuCCGACcUGAUc -3'
miRNA:   3'- acGCGGCGCCGg--CAGuGGCUGcACUG- -5'
14503 5' -61.6 NC_003521.1 + 150876 0.66 0.800568
Target:  5'- gGCGagaacgaggUGCGGCCGcaCGCCGGCGUcaucGACu -3'
miRNA:   3'- aCGCg--------GCGCCGGCa-GUGGCUGCA----CUG- -5'
14503 5' -61.6 NC_003521.1 + 224724 0.66 0.800568
Target:  5'- cGC-CCGUGGUgcUCGCCGACGcaGGCg -3'
miRNA:   3'- aCGcGGCGCCGgcAGUGGCUGCa-CUG- -5'
14503 5' -61.6 NC_003521.1 + 123567 0.66 0.800568
Target:  5'- aGCGCCagGCaGUCGUgcagCGCCG-CGUGAUg -3'
miRNA:   3'- aCGCGG--CGcCGGCA----GUGGCuGCACUG- -5'
14503 5' -61.6 NC_003521.1 + 90162 0.66 0.800568
Target:  5'- gGCGCCGCcGCCGgagaGCCGccuuCGUcGCg -3'
miRNA:   3'- aCGCGGCGcCGGCag--UGGCu---GCAcUG- -5'
14503 5' -61.6 NC_003521.1 + 116380 0.66 0.800568
Target:  5'- gUGcCGCCGCGGCCcaaccacgucUCGCCgGACGagGAg -3'
miRNA:   3'- -AC-GCGGCGCCGGc---------AGUGG-CUGCa-CUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.