Results 1 - 20 of 195 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14514 | 5' | -55.1 | NC_003521.1 | + | 131002 | 0.66 | 0.980662 |
Target: 5'- aGCCU---GACgcggGCGGCCuACAUCCuggCCCg -3' miRNA: 3'- -CGGGaagUUGa---CGCUGG-UGUAGG---GGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 141091 | 0.66 | 0.980662 |
Target: 5'- gGCCCUccuguggcugcUCuACUGCGGCCcgcGCAgcuucugCgCCCg -3' miRNA: 3'- -CGGGA-----------AGuUGACGCUGG---UGUa------GgGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 76372 | 0.66 | 0.980662 |
Target: 5'- cGCCCUUCA--UGCucaGGcCCGCGgcgCCCuCCa -3' miRNA: 3'- -CGGGAAGUugACG---CU-GGUGUa--GGG-GG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 189479 | 0.66 | 0.980662 |
Target: 5'- uUCCUgugCAGUUGaGGCCGCAUCUCCUu -3' miRNA: 3'- cGGGAa--GUUGACgCUGGUGUAGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 18810 | 0.66 | 0.980662 |
Target: 5'- cGCCCUgccugCAgauGCUgaGCGACCGCAaCCgCg -3' miRNA: 3'- -CGGGAa----GU---UGA--CGCUGGUGUaGGgGg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 122083 | 0.66 | 0.980662 |
Target: 5'- uGCCCgUCuGCaGCGACUugGUCUCg- -3' miRNA: 3'- -CGGGaAGuUGaCGCUGGugUAGGGgg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 221923 | 0.66 | 0.980662 |
Target: 5'- aCCCUUCGggGCUGCcgcggcGCCuCGUCCUCg -3' miRNA: 3'- cGGGAAGU--UGACGc-----UGGuGUAGGGGg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 68034 | 0.66 | 0.980662 |
Target: 5'- cGCCaCgggCGGC-GUGGuCCGCGgcgCCCCCg -3' miRNA: 3'- -CGG-Gaa-GUUGaCGCU-GGUGUa--GGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 236635 | 0.66 | 0.980662 |
Target: 5'- uCCUUUCAcCUgGCucCCAUGUCCCCUu -3' miRNA: 3'- cGGGAAGUuGA-CGcuGGUGUAGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 180590 | 0.66 | 0.980662 |
Target: 5'- cGCCg-UCAGCcucgaGACCGCAgcuUCCCCUu -3' miRNA: 3'- -CGGgaAGUUGacg--CUGGUGU---AGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 201422 | 0.66 | 0.980662 |
Target: 5'- cGCCCa--AACU-CGGCUccaACAUCgCCCCg -3' miRNA: 3'- -CGGGaagUUGAcGCUGG---UGUAG-GGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 7071 | 0.66 | 0.97874 |
Target: 5'- uGCCCccggugagaagaagCAgacGCgGCGGCgGCGUCCUCCu -3' miRNA: 3'- -CGGGaa------------GU---UGaCGCUGgUGUAGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 137254 | 0.66 | 0.978518 |
Target: 5'- cGCagCUUCuGCgcggGCGACCugGgCCCCg -3' miRNA: 3'- -CGg-GAAGuUGa---CGCUGGugUaGGGGg -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 178604 | 0.66 | 0.978518 |
Target: 5'- cGCCCUccugCAGCacgGCGuCCAacgCCUCCu -3' miRNA: 3'- -CGGGAa---GUUGa--CGCuGGUguaGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 108117 | 0.66 | 0.978518 |
Target: 5'- -gCCUUgGACcaGUG-CCGCGUCCCgCCa -3' miRNA: 3'- cgGGAAgUUGa-CGCuGGUGUAGGG-GG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 149231 | 0.66 | 0.978518 |
Target: 5'- cGCCCaUCGGCaccucGUGACCcACAcaccgCCCCUu -3' miRNA: 3'- -CGGGaAGUUGa----CGCUGG-UGUa----GGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 135985 | 0.66 | 0.978518 |
Target: 5'- cGCCCagCGugUcggGgGGCCGCGUCaCgCCCg -3' miRNA: 3'- -CGGGaaGUugA---CgCUGGUGUAG-G-GGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 187407 | 0.66 | 0.978518 |
Target: 5'- cGCaCCUUgcCGAcCUGcCGACgCGcCAUCCCCUg -3' miRNA: 3'- -CG-GGAA--GUU-GAC-GCUG-GU-GUAGGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 232467 | 0.66 | 0.978518 |
Target: 5'- uUUCUUCucugGCUGCGAgCGCua-CCCCa -3' miRNA: 3'- cGGGAAGu---UGACGCUgGUGuagGGGG- -5' |
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14514 | 5' | -55.1 | NC_003521.1 | + | 152373 | 0.66 | 0.978518 |
Target: 5'- aGCCCgaCGcCgagGCgGACgACGUCUCCCu -3' miRNA: 3'- -CGGGaaGUuGa--CG-CUGgUGUAGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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