miRNA display CGI


Results 1 - 20 of 195 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14514 5' -55.1 NC_003521.1 + 221923 0.66 0.980662
Target:  5'- aCCCUUCGggGCUGCcgcggcGCCuCGUCCUCg -3'
miRNA:   3'- cGGGAAGU--UGACGc-----UGGuGUAGGGGg -5'
14514 5' -55.1 NC_003521.1 + 68034 0.66 0.980662
Target:  5'- cGCCaCgggCGGC-GUGGuCCGCGgcgCCCCCg -3'
miRNA:   3'- -CGG-Gaa-GUUGaCGCU-GGUGUa--GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 236635 0.66 0.980662
Target:  5'- uCCUUUCAcCUgGCucCCAUGUCCCCUu -3'
miRNA:   3'- cGGGAAGUuGA-CGcuGGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 201422 0.66 0.980662
Target:  5'- cGCCCa--AACU-CGGCUccaACAUCgCCCCg -3'
miRNA:   3'- -CGGGaagUUGAcGCUGG---UGUAG-GGGG- -5'
14514 5' -55.1 NC_003521.1 + 122083 0.66 0.980662
Target:  5'- uGCCCgUCuGCaGCGACUugGUCUCg- -3'
miRNA:   3'- -CGGGaAGuUGaCGCUGGugUAGGGgg -5'
14514 5' -55.1 NC_003521.1 + 18810 0.66 0.980662
Target:  5'- cGCCCUgccugCAgauGCUgaGCGACCGCAaCCgCg -3'
miRNA:   3'- -CGGGAa----GU---UGA--CGCUGGUGUaGGgGg -5'
14514 5' -55.1 NC_003521.1 + 189479 0.66 0.980662
Target:  5'- uUCCUgugCAGUUGaGGCCGCAUCUCCUu -3'
miRNA:   3'- cGGGAa--GUUGACgCUGGUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 76372 0.66 0.980662
Target:  5'- cGCCCUUCA--UGCucaGGcCCGCGgcgCCCuCCa -3'
miRNA:   3'- -CGGGAAGUugACG---CU-GGUGUa--GGG-GG- -5'
14514 5' -55.1 NC_003521.1 + 141091 0.66 0.980662
Target:  5'- gGCCCUccuguggcugcUCuACUGCGGCCcgcGCAgcuucugCgCCCg -3'
miRNA:   3'- -CGGGA-----------AGuUGACGCUGG---UGUa------GgGGG- -5'
14514 5' -55.1 NC_003521.1 + 131002 0.66 0.980662
Target:  5'- aGCCU---GACgcggGCGGCCuACAUCCuggCCCg -3'
miRNA:   3'- -CGGGaagUUGa---CGCUGG-UGUAGG---GGG- -5'
14514 5' -55.1 NC_003521.1 + 180590 0.66 0.980662
Target:  5'- cGCCg-UCAGCcucgaGACCGCAgcuUCCCCUu -3'
miRNA:   3'- -CGGgaAGUUGacg--CUGGUGU---AGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 7071 0.66 0.97874
Target:  5'- uGCCCccggugagaagaagCAgacGCgGCGGCgGCGUCCUCCu -3'
miRNA:   3'- -CGGGaa------------GU---UGaCGCUGgUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 178604 0.66 0.978518
Target:  5'- cGCCCUccugCAGCacgGCGuCCAacgCCUCCu -3'
miRNA:   3'- -CGGGAa---GUUGa--CGCuGGUguaGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 149231 0.66 0.978518
Target:  5'- cGCCCaUCGGCaccucGUGACCcACAcaccgCCCCUu -3'
miRNA:   3'- -CGGGaAGUUGa----CGCUGG-UGUa----GGGGG- -5'
14514 5' -55.1 NC_003521.1 + 108117 0.66 0.978518
Target:  5'- -gCCUUgGACcaGUG-CCGCGUCCCgCCa -3'
miRNA:   3'- cgGGAAgUUGa-CGCuGGUGUAGGG-GG- -5'
14514 5' -55.1 NC_003521.1 + 135985 0.66 0.978518
Target:  5'- cGCCCagCGugUcggGgGGCCGCGUCaCgCCCg -3'
miRNA:   3'- -CGGGaaGUugA---CgCUGGUGUAG-G-GGG- -5'
14514 5' -55.1 NC_003521.1 + 152373 0.66 0.978518
Target:  5'- aGCCCgaCGcCgagGCgGACgACGUCUCCCu -3'
miRNA:   3'- -CGGGaaGUuGa--CG-CUGgUGUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 187407 0.66 0.978518
Target:  5'- cGCaCCUUgcCGAcCUGcCGACgCGcCAUCCCCUg -3'
miRNA:   3'- -CG-GGAA--GUU-GAC-GCUG-GU-GUAGGGGG- -5'
14514 5' -55.1 NC_003521.1 + 232467 0.66 0.978518
Target:  5'- uUUCUUCucugGCUGCGAgCGCua-CCCCa -3'
miRNA:   3'- cGGGAAGu---UGACGCUgGUGuagGGGG- -5'
14514 5' -55.1 NC_003521.1 + 137254 0.66 0.978518
Target:  5'- cGCagCUUCuGCgcggGCGACCugGgCCCCg -3'
miRNA:   3'- -CGg-GAAGuUGa---CGCUGGugUaGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.