miRNA display CGI


Results 1 - 20 of 374 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14516 5' -59.7 NC_003521.1 + 149234 0.65 0.859349
Target:  5'- aAGCUGcGGCGCGGcuacuacGCCUacgacGUGGCCAUg -3'
miRNA:   3'- -UCGGCaUCGUGUC-------CGGG-----UACCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 37456 0.65 0.859349
Target:  5'- cGCUGUGggcucgcGCGCGGGCCacCGUGguGCCGCa -3'
miRNA:   3'- uCGGCAU-------CGUGUCCGG--GUAC--CGGUGg -5'
14516 5' -59.7 NC_003521.1 + 215218 0.66 0.855662
Target:  5'- cAGCCcggugaagGUAGCGaa-GCCCGUcagggugaagagcgaGGCCGCCa -3'
miRNA:   3'- -UCGG--------CAUCGUgucCGGGUA---------------CCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 190996 0.66 0.855662
Target:  5'- cGGCCGUcugcacggcgcacuGCACGGcGCCCAgccauucgGGCgGCa -3'
miRNA:   3'- -UCGGCAu-------------CGUGUC-CGGGUa-------CCGgUGg -5'
14516 5' -59.7 NC_003521.1 + 181313 0.66 0.85268
Target:  5'- aGGCCGcc-CGCGGGCCa--GGgCGCCg -3'
miRNA:   3'- -UCGGCaucGUGUCCGGguaCCgGUGG- -5'
14516 5' -59.7 NC_003521.1 + 74584 0.66 0.85268
Target:  5'- gAGCgGcGGCGCGGcGuCCCGcGGCCGgCg -3'
miRNA:   3'- -UCGgCaUCGUGUC-C-GGGUaCCGGUgG- -5'
14516 5' -59.7 NC_003521.1 + 56842 0.66 0.85268
Target:  5'- aAGUCGUAGCACGGcaucuugucgaaGCCCAcggUGGaCAUg -3'
miRNA:   3'- -UCGGCAUCGUGUC------------CGGGU---ACCgGUGg -5'
14516 5' -59.7 NC_003521.1 + 125174 0.66 0.85268
Target:  5'- uGGUCGaaGGUGCAgaagaugguGGaCuCCAUGGCCGCCa -3'
miRNA:   3'- -UCGGCa-UCGUGU---------CC-G-GGUACCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 69549 0.66 0.85268
Target:  5'- cGCgGauacAGCGCAGGCCaCAgagGGUCuCCg -3'
miRNA:   3'- uCGgCa---UCGUGUCCGG-GUa--CCGGuGG- -5'
14516 5' -59.7 NC_003521.1 + 33 0.66 0.85268
Target:  5'- uGCCGUGGC-CGGGaUCgGUGaGUCACg -3'
miRNA:   3'- uCGGCAUCGuGUCC-GGgUAC-CGGUGg -5'
14516 5' -59.7 NC_003521.1 + 70403 0.66 0.85268
Target:  5'- cGUCGUagcguucgaAGCGCAGGaa---GGCCACCg -3'
miRNA:   3'- uCGGCA---------UCGUGUCCggguaCCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 224085 0.66 0.85268
Target:  5'- cGGCgGgcGCGCGcGCCgGcGGUCGCCg -3'
miRNA:   3'- -UCGgCauCGUGUcCGGgUaCCGGUGG- -5'
14516 5' -59.7 NC_003521.1 + 73703 0.66 0.85268
Target:  5'- gAGCuuCGUggAGCGCAGcGaCCCG-GGCCGCg -3'
miRNA:   3'- -UCG--GCA--UCGUGUC-C-GGGUaCCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 68757 0.66 0.85268
Target:  5'- cGCCGUGGgGCAGuucgaggaGCCCGccGaGaCCACCg -3'
miRNA:   3'- uCGGCAUCgUGUC--------CGGGUa-C-C-GGUGG- -5'
14516 5' -59.7 NC_003521.1 + 174145 0.66 0.85268
Target:  5'- cGCCGacAGCACgugacgcuccaGGGCCUgcaGGCCGCg -3'
miRNA:   3'- uCGGCa-UCGUG-----------UCCGGGua-CCGGUGg -5'
14516 5' -59.7 NC_003521.1 + 133213 0.66 0.85268
Target:  5'- cGGUCGgGGCGCGGGUUCAggGGCgAUg -3'
miRNA:   3'- -UCGGCaUCGUGUCCGGGUa-CCGgUGg -5'
14516 5' -59.7 NC_003521.1 + 163084 0.66 0.85268
Target:  5'- cGCCGaGGC-C-GGCCCGUccucGGgCGCCa -3'
miRNA:   3'- uCGGCaUCGuGuCCGGGUA----CCgGUGG- -5'
14516 5' -59.7 NC_003521.1 + 144890 0.66 0.85268
Target:  5'- cGCCaagauGCuGCGGGCCCAcGGCaUGCCg -3'
miRNA:   3'- uCGGcau--CG-UGUCCGGGUaCCG-GUGG- -5'
14516 5' -59.7 NC_003521.1 + 68043 0.66 0.85268
Target:  5'- cGgCGUGGUccGCGGcGCCCccgGUGGCaGCCa -3'
miRNA:   3'- uCgGCAUCG--UGUC-CGGG---UACCGgUGG- -5'
14516 5' -59.7 NC_003521.1 + 240582 0.66 0.85268
Target:  5'- uGCCGUGGC-CGGGaUCgGUGaGUCACg -3'
miRNA:   3'- uCGGCAUCGuGUCC-GGgUAC-CGGUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.