Results 1 - 20 of 173 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14528 | 5' | -58.4 | NC_003521.1 | + | 134138 | 0.66 | 0.919972 |
Target: 5'- cCCUGAaguggauggcgugcaUCUCGuCGCACaGGUagGUGGCCAu -3' miRNA: 3'- -GGACU---------------GGAGC-GCGUG-CCGg-UACUGGU- -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 179534 | 0.66 | 0.917817 |
Target: 5'- uCCUugGACaggUGCGCGCGGCuCAgcGCCAa -3' miRNA: 3'- -GGA--CUGga-GCGCGUGCCG-GUacUGGU- -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 22179 | 0.66 | 0.917817 |
Target: 5'- --gGACgaggCGcCGC-CGGCCGUGGCCGc -3' miRNA: 3'- ggaCUGga--GC-GCGuGCCGGUACUGGU- -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 163095 | 0.66 | 0.917817 |
Target: 5'- gCCcGuCCUCGgGCGCcagcGCCAcGACCAc -3' miRNA: 3'- -GGaCuGGAGCgCGUGc---CGGUaCUGGU- -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 16680 | 0.66 | 0.917817 |
Target: 5'- uCCUGACCUgGCcCGacuCGGCCcacGGCCu -3' miRNA: 3'- -GGACUGGAgCGcGU---GCCGGua-CUGGu -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 141621 | 0.66 | 0.917817 |
Target: 5'- uCCagGACUgCGC-CGCGGCCGUcACCGa -3' miRNA: 3'- -GGa-CUGGaGCGcGUGCCGGUAcUGGU- -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 172135 | 0.66 | 0.917817 |
Target: 5'- -aUGAgUUCGU-CGCGGCaCAUGGCCGc -3' miRNA: 3'- ggACUgGAGCGcGUGCCG-GUACUGGU- -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 115678 | 0.66 | 0.917817 |
Target: 5'- gCUGACCaUCGCcgacCugGGCaaacUGGCCAa -3' miRNA: 3'- gGACUGG-AGCGc---GugCCGgu--ACUGGU- -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 195799 | 0.66 | 0.917817 |
Target: 5'- --aGGUCUCGCccuGCACGGCCGUGGgaucggauuCCAg -3' miRNA: 3'- ggaCUGGAGCG---CGUGCCGGUACU---------GGU- -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 89519 | 0.66 | 0.917817 |
Target: 5'- gCCUGGCCgccuugCGCGCGuCGGaacCCAggcugcgGGCCc -3' miRNA: 3'- -GGACUGGa-----GCGCGU-GCC---GGUa------CUGGu -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 2631 | 0.66 | 0.917817 |
Target: 5'- uCUUGGCCUCGa-CuuGGCUAUGAUCc -3' miRNA: 3'- -GGACUGGAGCgcGugCCGGUACUGGu -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 197338 | 0.66 | 0.917817 |
Target: 5'- gUUGGCCgccgCGgccaGCACGGCCGccgcgcUGGCCc -3' miRNA: 3'- gGACUGGa---GCg---CGUGCCGGU------ACUGGu -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 235091 | 0.66 | 0.912279 |
Target: 5'- aCCaUGACa-CGCGC-CGuGCCcgGGCCGu -3' miRNA: 3'- -GG-ACUGgaGCGCGuGC-CGGuaCUGGU- -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 223672 | 0.66 | 0.912279 |
Target: 5'- gCCUcGGCCUCGCGCcGCuGCUGgaACCAc -3' miRNA: 3'- -GGA-CUGGAGCGCG-UGcCGGUacUGGU- -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 57243 | 0.66 | 0.912279 |
Target: 5'- --cGGCuCUCGCGC--GGCCAguUGGCCu -3' miRNA: 3'- ggaCUG-GAGCGCGugCCGGU--ACUGGu -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 145587 | 0.66 | 0.912279 |
Target: 5'- --cGGCacgaCGCG-GCGGCCGUGGCCu -3' miRNA: 3'- ggaCUGga--GCGCgUGCCGGUACUGGu -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 103665 | 0.66 | 0.912279 |
Target: 5'- --cGGCCgcuGCGgcCGCGGCCAUGGCgGg -3' miRNA: 3'- ggaCUGGag-CGC--GUGCCGGUACUGgU- -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 140345 | 0.66 | 0.912279 |
Target: 5'- aCCUGGCggCGguaGCaACGGCCGUcACCAc -3' miRNA: 3'- -GGACUGgaGCg--CG-UGCCGGUAcUGGU- -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 138786 | 0.66 | 0.912279 |
Target: 5'- aCCcGGCCgUGCuGCGC-GCCGUGGCCc -3' miRNA: 3'- -GGaCUGGaGCG-CGUGcCGGUACUGGu -5' |
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14528 | 5' | -58.4 | NC_003521.1 | + | 223300 | 0.66 | 0.910576 |
Target: 5'- aCUGGCUgaauccCGCGC-CGccgggccgggaaccGCCGUGACCGg -3' miRNA: 3'- gGACUGGa-----GCGCGuGC--------------CGGUACUGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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