miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14528 5' -58.4 NC_003521.1 + 134138 0.66 0.919972
Target:  5'- cCCUGAaguggauggcgugcaUCUCGuCGCACaGGUagGUGGCCAu -3'
miRNA:   3'- -GGACU---------------GGAGC-GCGUG-CCGg-UACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 179534 0.66 0.917817
Target:  5'- uCCUugGACaggUGCGCGCGGCuCAgcGCCAa -3'
miRNA:   3'- -GGA--CUGga-GCGCGUGCCG-GUacUGGU- -5'
14528 5' -58.4 NC_003521.1 + 22179 0.66 0.917817
Target:  5'- --gGACgaggCGcCGC-CGGCCGUGGCCGc -3'
miRNA:   3'- ggaCUGga--GC-GCGuGCCGGUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 163095 0.66 0.917817
Target:  5'- gCCcGuCCUCGgGCGCcagcGCCAcGACCAc -3'
miRNA:   3'- -GGaCuGGAGCgCGUGc---CGGUaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 16680 0.66 0.917817
Target:  5'- uCCUGACCUgGCcCGacuCGGCCcacGGCCu -3'
miRNA:   3'- -GGACUGGAgCGcGU---GCCGGua-CUGGu -5'
14528 5' -58.4 NC_003521.1 + 141621 0.66 0.917817
Target:  5'- uCCagGACUgCGC-CGCGGCCGUcACCGa -3'
miRNA:   3'- -GGa-CUGGaGCGcGUGCCGGUAcUGGU- -5'
14528 5' -58.4 NC_003521.1 + 172135 0.66 0.917817
Target:  5'- -aUGAgUUCGU-CGCGGCaCAUGGCCGc -3'
miRNA:   3'- ggACUgGAGCGcGUGCCG-GUACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 115678 0.66 0.917817
Target:  5'- gCUGACCaUCGCcgacCugGGCaaacUGGCCAa -3'
miRNA:   3'- gGACUGG-AGCGc---GugCCGgu--ACUGGU- -5'
14528 5' -58.4 NC_003521.1 + 195799 0.66 0.917817
Target:  5'- --aGGUCUCGCccuGCACGGCCGUGGgaucggauuCCAg -3'
miRNA:   3'- ggaCUGGAGCG---CGUGCCGGUACU---------GGU- -5'
14528 5' -58.4 NC_003521.1 + 89519 0.66 0.917817
Target:  5'- gCCUGGCCgccuugCGCGCGuCGGaacCCAggcugcgGGCCc -3'
miRNA:   3'- -GGACUGGa-----GCGCGU-GCC---GGUa------CUGGu -5'
14528 5' -58.4 NC_003521.1 + 2631 0.66 0.917817
Target:  5'- uCUUGGCCUCGa-CuuGGCUAUGAUCc -3'
miRNA:   3'- -GGACUGGAGCgcGugCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 197338 0.66 0.917817
Target:  5'- gUUGGCCgccgCGgccaGCACGGCCGccgcgcUGGCCc -3'
miRNA:   3'- gGACUGGa---GCg---CGUGCCGGU------ACUGGu -5'
14528 5' -58.4 NC_003521.1 + 235091 0.66 0.912279
Target:  5'- aCCaUGACa-CGCGC-CGuGCCcgGGCCGu -3'
miRNA:   3'- -GG-ACUGgaGCGCGuGC-CGGuaCUGGU- -5'
14528 5' -58.4 NC_003521.1 + 223672 0.66 0.912279
Target:  5'- gCCUcGGCCUCGCGCcGCuGCUGgaACCAc -3'
miRNA:   3'- -GGA-CUGGAGCGCG-UGcCGGUacUGGU- -5'
14528 5' -58.4 NC_003521.1 + 57243 0.66 0.912279
Target:  5'- --cGGCuCUCGCGC--GGCCAguUGGCCu -3'
miRNA:   3'- ggaCUG-GAGCGCGugCCGGU--ACUGGu -5'
14528 5' -58.4 NC_003521.1 + 145587 0.66 0.912279
Target:  5'- --cGGCacgaCGCG-GCGGCCGUGGCCu -3'
miRNA:   3'- ggaCUGga--GCGCgUGCCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 103665 0.66 0.912279
Target:  5'- --cGGCCgcuGCGgcCGCGGCCAUGGCgGg -3'
miRNA:   3'- ggaCUGGag-CGC--GUGCCGGUACUGgU- -5'
14528 5' -58.4 NC_003521.1 + 140345 0.66 0.912279
Target:  5'- aCCUGGCggCGguaGCaACGGCCGUcACCAc -3'
miRNA:   3'- -GGACUGgaGCg--CG-UGCCGGUAcUGGU- -5'
14528 5' -58.4 NC_003521.1 + 138786 0.66 0.912279
Target:  5'- aCCcGGCCgUGCuGCGC-GCCGUGGCCc -3'
miRNA:   3'- -GGaCUGGaGCG-CGUGcCGGUACUGGu -5'
14528 5' -58.4 NC_003521.1 + 223300 0.66 0.910576
Target:  5'- aCUGGCUgaauccCGCGC-CGccgggccgggaaccGCCGUGACCGg -3'
miRNA:   3'- gGACUGGa-----GCGCGuGC--------------CGGUACUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.