miRNA display CGI


Results 1 - 20 of 428 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14534 3' -56.6 NC_003521.1 + 49720 0.66 0.957905
Target:  5'- aCGAUAGaacUGGUggacgagacgcagccCGCCGcCGCCACCACGg -3'
miRNA:   3'- -GCUGUU---GCCA---------------GCGGUcGUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 129603 0.66 0.956457
Target:  5'- uGACc-CGuGUCGCCcacuuuccGGCGCCAUCGCc -3'
miRNA:   3'- gCUGuuGC-CAGCGG--------UCGUGGUGGUGu -5'
14534 3' -56.6 NC_003521.1 + 59278 0.66 0.956457
Target:  5'- cCGACuacugAGCGGUCGCggCGGC-CCGCUAg- -3'
miRNA:   3'- -GCUG-----UUGCCAGCG--GUCGuGGUGGUgu -5'
14534 3' -56.6 NC_003521.1 + 217233 0.66 0.956457
Target:  5'- aGAgGAUGcagGCCAGCACCcCCGCGc -3'
miRNA:   3'- gCUgUUGCcagCGGUCGUGGuGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 195197 0.66 0.956457
Target:  5'- cCGGCGGCGGUgGCCGucuGCGUCGgCGCu -3'
miRNA:   3'- -GCUGUUGCCAgCGGU---CGUGGUgGUGu -5'
14534 3' -56.6 NC_003521.1 + 52792 0.66 0.956457
Target:  5'- aGGCGGCGGU-G-CGGCuCCACCugGa -3'
miRNA:   3'- gCUGUUGCCAgCgGUCGuGGUGGugU- -5'
14534 3' -56.6 NC_003521.1 + 190955 0.66 0.956457
Target:  5'- aGACGACGGaugauggGCacuuacuuGCACCGCCACc -3'
miRNA:   3'- gCUGUUGCCag-----CGgu------CGUGGUGGUGu -5'
14534 3' -56.6 NC_003521.1 + 224035 0.66 0.956457
Target:  5'- -cAUAAUGGgCGCCGGCAgCAUCugAa -3'
miRNA:   3'- gcUGUUGCCaGCGGUCGUgGUGGugU- -5'
14534 3' -56.6 NC_003521.1 + 144847 0.66 0.956457
Target:  5'- aCGACAGCGGagaUCGCUccccgcGGguCCccgaACCGCAu -3'
miRNA:   3'- -GCUGUUGCC---AGCGG------UCguGG----UGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 71885 0.66 0.956457
Target:  5'- gCGACAGCGGcggcccUGCCuGCGCCcuccUCGCAu -3'
miRNA:   3'- -GCUGUUGCCa-----GCGGuCGUGGu---GGUGU- -5'
14534 3' -56.6 NC_003521.1 + 208951 0.66 0.956457
Target:  5'- uGGCGguGCGGUacCGCUcGCACCgcGCCGCc -3'
miRNA:   3'- gCUGU--UGCCA--GCGGuCGUGG--UGGUGu -5'
14534 3' -56.6 NC_003521.1 + 99625 0.66 0.956457
Target:  5'- cCGGCGGCGcagCGCCAcgGCCACCcGCGa -3'
miRNA:   3'- -GCUGUUGCca-GCGGUcgUGGUGG-UGU- -5'
14534 3' -56.6 NC_003521.1 + 115538 0.66 0.956457
Target:  5'- aCGAC-GCGGcUCGCCugacggAGCGCCguGCUGCGc -3'
miRNA:   3'- -GCUGuUGCC-AGCGG------UCGUGG--UGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 115493 0.66 0.956089
Target:  5'- gGGCcGCGuGUCGCUcuguGGCcggacccACCGCCGCGu -3'
miRNA:   3'- gCUGuUGC-CAGCGG----UCG-------UGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 120235 0.66 0.956089
Target:  5'- cCGGCAggagccgGCGGccgCGCCGuGCAUCGCCuCGa -3'
miRNA:   3'- -GCUGU-------UGCCa--GCGGU-CGUGGUGGuGU- -5'
14534 3' -56.6 NC_003521.1 + 56729 0.66 0.952689
Target:  5'- uCGuucauCAGCGGUccgagCGCCAuGguCCACUACAg -3'
miRNA:   3'- -GCu----GUUGCCA-----GCGGU-CguGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 15704 0.66 0.952689
Target:  5'- uCGACcagguGCuGUCGCuCGGCAUC-CCGCAc -3'
miRNA:   3'- -GCUGu----UGcCAGCG-GUCGUGGuGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 14454 0.66 0.952689
Target:  5'- -uGCGGCGG-CGUCAGCcGCCGcucCCGCGg -3'
miRNA:   3'- gcUGUUGCCaGCGGUCG-UGGU---GGUGU- -5'
14534 3' -56.6 NC_003521.1 + 43167 0.66 0.952689
Target:  5'- uGGCGcuGCuGcCGCacgAGCGCCACCGCGa -3'
miRNA:   3'- gCUGU--UGcCaGCGg--UCGUGGUGGUGU- -5'
14534 3' -56.6 NC_003521.1 + 154382 0.66 0.952689
Target:  5'- gCGuCcuCGGUCGCC-GCuGCCGCCAa- -3'
miRNA:   3'- -GCuGuuGCCAGCGGuCG-UGGUGGUgu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.