miRNA display CGI


Results 1 - 20 of 651 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14534 5' -61.7 NC_003521.1 + 147877 0.65 0.797327
Target:  5'- uGGUGCUGggauuuugguGUucgaucggaaaaauGGCGCCGUCGCuGCCGUa -3'
miRNA:   3'- -CCACGAU----------CG--------------UCGCGGUGGCGcCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 206719 0.65 0.797327
Target:  5'- cGUGCgGGCGGCGggcucCUAUCGCGcgauaucgccgacuGCCGCc -3'
miRNA:   3'- cCACGaUCGUCGC-----GGUGGCGC--------------CGGCG- -5'
14534 5' -61.7 NC_003521.1 + 154031 0.65 0.796485
Target:  5'- uGGUGCaugcucuugccgcGGCAGgCGCCcauaaaGCCGUGcagcaGCCGCa -3'
miRNA:   3'- -CCACGa------------UCGUC-GCGG------UGGCGC-----CGGCG- -5'
14534 5' -61.7 NC_003521.1 + 233807 0.66 0.794797
Target:  5'- cGUGC-AGCAGCGCCAgcccaaguacgguauCCaCcGCCGUg -3'
miRNA:   3'- cCACGaUCGUCGCGGU---------------GGcGcCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 29344 0.66 0.794797
Target:  5'- --cGCUGccacgcgcacuggacGgAGUGCgAacCCGCGGCCGCg -3'
miRNA:   3'- ccaCGAU---------------CgUCGCGgU--GGCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 17013 0.66 0.791406
Target:  5'- cGGUGgcGGCGGCGCagGCCcgucgucugGCGGCCcacgGCg -3'
miRNA:   3'- -CCACgaUCGUCGCGg-UGG---------CGCCGG----CG- -5'
14534 5' -61.7 NC_003521.1 + 27063 0.66 0.791406
Target:  5'- --cGCUGGCcaucuucuacguGGcCGCCACCaCGGCCu- -3'
miRNA:   3'- ccaCGAUCG------------UC-GCGGUGGcGCCGGcg -5'
14534 5' -61.7 NC_003521.1 + 172391 0.66 0.791406
Target:  5'- --cGCgguugAGgGGCGCCggcggaGCCGUcGCCGCg -3'
miRNA:   3'- ccaCGa----UCgUCGCGG------UGGCGcCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 161586 0.66 0.791406
Target:  5'- cGUGUc-GCcGCGCUACCGCGGgCa- -3'
miRNA:   3'- cCACGauCGuCGCGGUGGCGCCgGcg -5'
14534 5' -61.7 NC_003521.1 + 169303 0.66 0.791406
Target:  5'- cGGUGaCgucGGcCGGCGUCGgucgcagcgUCGCGGCCGg -3'
miRNA:   3'- -CCAC-Ga--UC-GUCGCGGU---------GGCGCCGGCg -5'
14534 5' -61.7 NC_003521.1 + 184904 0.66 0.791406
Target:  5'- --cGCUGGCAcccccguuGcCGCCGCCGuCGGagggucggcgaCCGCg -3'
miRNA:   3'- ccaCGAUCGU--------C-GCGGUGGC-GCC-----------GGCG- -5'
14534 5' -61.7 NC_003521.1 + 28079 0.66 0.791406
Target:  5'- -----gAGCAGCGCCACguugGUGGCCa- -3'
miRNA:   3'- ccacgaUCGUCGCGGUGg---CGCCGGcg -5'
14534 5' -61.7 NC_003521.1 + 142763 0.66 0.791406
Target:  5'- gGGUGac--CAGCGU--CCGCGGCgGCg -3'
miRNA:   3'- -CCACgaucGUCGCGguGGCGCCGgCG- -5'
14534 5' -61.7 NC_003521.1 + 200384 0.66 0.791406
Target:  5'- cGG-GCUAG-AGCGCgcgagCACC-UGGCCGUg -3'
miRNA:   3'- -CCaCGAUCgUCGCG-----GUGGcGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 111508 0.66 0.791406
Target:  5'- cGG-GCUGGCGGCGgCGgCGCacGCCa- -3'
miRNA:   3'- -CCaCGAUCGUCGCgGUgGCGc-CGGcg -5'
14534 5' -61.7 NC_003521.1 + 169625 0.66 0.791406
Target:  5'- uGGUGgaGGUguacGGUGCUGuuGUGGUCGUa -3'
miRNA:   3'- -CCACgaUCG----UCGCGGUggCGCCGGCG- -5'
14534 5' -61.7 NC_003521.1 + 63421 0.66 0.791406
Target:  5'- cGG-GgaAGCGGC-CCGCCGCGuauaucGCCGa -3'
miRNA:   3'- -CCaCgaUCGUCGcGGUGGCGC------CGGCg -5'
14534 5' -61.7 NC_003521.1 + 182049 0.66 0.791406
Target:  5'- --cGCcGGCGcGCGCCGCCcugcaGUGGCUGg -3'
miRNA:   3'- ccaCGaUCGU-CGCGGUGG-----CGCCGGCg -5'
14534 5' -61.7 NC_003521.1 + 118934 0.66 0.791406
Target:  5'- uGG-GC-GGCGGCGUC-CCGUcagGGCCaGCg -3'
miRNA:   3'- -CCaCGaUCGUCGCGGuGGCG---CCGG-CG- -5'
14534 5' -61.7 NC_003521.1 + 181729 0.66 0.791406
Target:  5'- --cGCgcGCAcGCugGCCAa-GCGGCCGCg -3'
miRNA:   3'- ccaCGauCGU-CG--CGGUggCGCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.