miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14545 3' -53.5 NC_003521.1 + 200394 0.66 0.991088
Target:  5'- cGCGCGagcaccuggcCGUGGUGgacagCACCGAGUUCg -3'
miRNA:   3'- cUGCGCa---------GUACCACga---GUGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 16711 0.66 0.991088
Target:  5'- aGACGCG-CGUGaUGCgCGgCGAGUUCg -3'
miRNA:   3'- -CUGCGCaGUACcACGaGUgGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 48989 0.66 0.991088
Target:  5'- aGGCGCugaggaaCGUGcUGCgggaCGCCGAGUCCa -3'
miRNA:   3'- -CUGCGca-----GUACcACGa---GUGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 23587 0.66 0.989874
Target:  5'- gGGCGCGgg--GGUGCUgGCCugcaUCCu -3'
miRNA:   3'- -CUGCGCaguaCCACGAgUGGuuc-AGG- -5'
14545 3' -53.5 NC_003521.1 + 224318 0.66 0.989874
Target:  5'- aGACGCccccGUCAcGGUGaCUCgcGCUGAGUCg -3'
miRNA:   3'- -CUGCG----CAGUaCCAC-GAG--UGGUUCAGg -5'
14545 3' -53.5 NC_003521.1 + 5213 0.66 0.989874
Target:  5'- cACGCGguc-GG-GCUCcgcCCGAGUCCg -3'
miRNA:   3'- cUGCGCaguaCCaCGAGu--GGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 137960 0.66 0.989874
Target:  5'- aGCGCGUgugguaugccgaCGUGGUGCgcuguguccgCGCgCAGGUCg -3'
miRNA:   3'- cUGCGCA------------GUACCACGa---------GUG-GUUCAGg -5'
14545 3' -53.5 NC_003521.1 + 107668 0.66 0.989486
Target:  5'- gGACGCGgaacauauuacggcUCAUGGcGUUgGCCAGGUa- -3'
miRNA:   3'- -CUGCGC--------------AGUACCaCGAgUGGUUCAgg -5'
14545 3' -53.5 NC_003521.1 + 175779 0.66 0.988534
Target:  5'- aGGCGCGUCAUuagccGGgGCUgCACgCGGG-CCa -3'
miRNA:   3'- -CUGCGCAGUA-----CCaCGA-GUG-GUUCaGG- -5'
14545 3' -53.5 NC_003521.1 + 188769 0.66 0.988534
Target:  5'- -cCGCGUCAucugccgcUGcUGCUCGuCUggGUCCc -3'
miRNA:   3'- cuGCGCAGU--------ACcACGAGU-GGuuCAGG- -5'
14545 3' -53.5 NC_003521.1 + 235179 0.66 0.988534
Target:  5'- -uCGCGUCAUGGUGgaaUC-CCAcGcCCu -3'
miRNA:   3'- cuGCGCAGUACCACg--AGuGGUuCaGG- -5'
14545 3' -53.5 NC_003521.1 + 166862 0.66 0.988534
Target:  5'- uGGCGCGgcgggcgCA-GGUcGUaCAUCAAGUCCg -3'
miRNA:   3'- -CUGCGCa------GUaCCA-CGaGUGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 181061 0.66 0.98706
Target:  5'- -cCGCuGaUCAcgaaGcUGCUCACCAGGUCCg -3'
miRNA:   3'- cuGCG-C-AGUa---CcACGAGUGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 99254 0.66 0.98706
Target:  5'- cGCGCGUCGUc--GCgCGCgAGGUCCa -3'
miRNA:   3'- cUGCGCAGUAccaCGaGUGgUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 19563 0.66 0.98706
Target:  5'- cGCGUGcUCgGUGGUcUUCACCAccacGGUCCa -3'
miRNA:   3'- cUGCGC-AG-UACCAcGAGUGGU----UCAGG- -5'
14545 3' -53.5 NC_003521.1 + 175168 0.66 0.98706
Target:  5'- -uCGCGg-AUGGcGUUCuCCAGGUCCu -3'
miRNA:   3'- cuGCGCagUACCaCGAGuGGUUCAGG- -5'
14545 3' -53.5 NC_003521.1 + 170934 0.66 0.985444
Target:  5'- cGugGUGUUgcguuUGGUGCUgACCAuGaUCCc -3'
miRNA:   3'- -CugCGCAGu----ACCACGAgUGGUuC-AGG- -5'
14545 3' -53.5 NC_003521.1 + 17443 0.66 0.984931
Target:  5'- -cCGCGUCggGGcgccgcgaugucgcUGCUgACCAAGgCCg -3'
miRNA:   3'- cuGCGCAGuaCC--------------ACGAgUGGUUCaGG- -5'
14545 3' -53.5 NC_003521.1 + 105121 0.67 0.981756
Target:  5'- uGACGCauuccaccGUCA-GGUGCUCAaaGAGgCCg -3'
miRNA:   3'- -CUGCG--------CAGUaCCACGAGUggUUCaGG- -5'
14545 3' -53.5 NC_003521.1 + 22363 0.67 0.979668
Target:  5'- uGCGCccacggCGUGGUGCcgGCCAuGUCCu -3'
miRNA:   3'- cUGCGca----GUACCACGagUGGUuCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.