miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14547 3' -52.5 NC_003521.1 + 240117 0.66 0.995876
Target:  5'- gGGGUGGGCg---UGCgGUCGUcccGGCGg -3'
miRNA:   3'- -UCCGCCCGguaaAUGgCAGUAa--CUGC- -5'
14547 3' -52.5 NC_003521.1 + 121177 0.66 0.995876
Target:  5'- aGGGC-GGCCA---GCgCGUCGUacUGGCGu -3'
miRNA:   3'- -UCCGcCCGGUaaaUG-GCAGUA--ACUGC- -5'
14547 3' -52.5 NC_003521.1 + 19126 0.66 0.995876
Target:  5'- uGGCGGGCCGccggugUACCaGUCGgagUGcCu -3'
miRNA:   3'- uCCGCCCGGUaa----AUGG-CAGUa--ACuGc -5'
14547 3' -52.5 NC_003521.1 + 39890 0.66 0.995876
Target:  5'- gGGGUGGGCg---UGCgGUCGUcccGGCGg -3'
miRNA:   3'- -UCCGCCCGguaaAUGgCAGUAa--CUGC- -5'
14547 3' -52.5 NC_003521.1 + 124935 0.66 0.995419
Target:  5'- cAGGCcuucccGGGCCuggacuuuaacgcgGCCGUguUUGACGa -3'
miRNA:   3'- -UCCG------CCCGGuaaa----------UGGCAguAACUGC- -5'
14547 3' -52.5 NC_003521.1 + 23643 0.66 0.99521
Target:  5'- uGGGCGG--CAUggACCGUCGUcguUGGCa -3'
miRNA:   3'- -UCCGCCcgGUAaaUGGCAGUA---ACUGc -5'
14547 3' -52.5 NC_003521.1 + 229077 0.66 0.99521
Target:  5'- aGGGCGaGUCGggc-CCGUCGaUGACGg -3'
miRNA:   3'- -UCCGCcCGGUaaauGGCAGUaACUGC- -5'
14547 3' -52.5 NC_003521.1 + 131863 0.66 0.99521
Target:  5'- aAGGCGgccacGGCCAUcgUGCCGcgCGUgucgGGCa -3'
miRNA:   3'- -UCCGC-----CCGGUAa-AUGGCa-GUAa---CUGc -5'
14547 3' -52.5 NC_003521.1 + 6411 0.66 0.99521
Target:  5'- cGGCgacGGGUC--UUGCCGccucgggacgcUCAUUGACGg -3'
miRNA:   3'- uCCG---CCCGGuaAAUGGC-----------AGUAACUGC- -5'
14547 3' -52.5 NC_003521.1 + 17019 0.66 0.99521
Target:  5'- cGGCGGcGCaggc--CCGUCGUcUGGCGg -3'
miRNA:   3'- uCCGCC-CGguaaauGGCAGUA-ACUGC- -5'
14547 3' -52.5 NC_003521.1 + 62500 0.66 0.99521
Target:  5'- --cCGGGCCcgcUGCUGUCcUUGACGu -3'
miRNA:   3'- uccGCCCGGuaaAUGGCAGuAACUGC- -5'
14547 3' -52.5 NC_003521.1 + 145659 0.66 0.994994
Target:  5'- uGGUGGGCCcggccggccgacuccUUGCCGUCGgc-GCGg -3'
miRNA:   3'- uCCGCCCGGua-------------AAUGGCAGUaacUGC- -5'
14547 3' -52.5 NC_003521.1 + 175410 0.66 0.99446
Target:  5'- cAGGUGGGUCAgggaggcGCgCGUCugagUGGCGu -3'
miRNA:   3'- -UCCGCCCGGUaaa----UG-GCAGua--ACUGC- -5'
14547 3' -52.5 NC_003521.1 + 71059 0.66 0.99446
Target:  5'- aAGcGCGGcGCCAUggGCCGaCGUUGcUGa -3'
miRNA:   3'- -UC-CGCC-CGGUAaaUGGCaGUAACuGC- -5'
14547 3' -52.5 NC_003521.1 + 233184 0.66 0.99446
Target:  5'- uGGCGGccGCCGUU-ACCGUCGgucguucccGACa -3'
miRNA:   3'- uCCGCC--CGGUAAaUGGCAGUaa-------CUGc -5'
14547 3' -52.5 NC_003521.1 + 166955 0.66 0.99446
Target:  5'- cGGGCGGGgggaggcuCUcgUcGCUGUgGUUGACGu -3'
miRNA:   3'- -UCCGCCC--------GGuaAaUGGCAgUAACUGC- -5'
14547 3' -52.5 NC_003521.1 + 75612 0.66 0.993617
Target:  5'- cGGGCGGcGCCAcg-GCUcaGUCGccGACGa -3'
miRNA:   3'- -UCCGCC-CGGUaaaUGG--CAGUaaCUGC- -5'
14547 3' -52.5 NC_003521.1 + 131056 0.66 0.993617
Target:  5'- cGGCGGGCCucuggACgCGg---UGGCGg -3'
miRNA:   3'- uCCGCCCGGuaaa-UG-GCaguaACUGC- -5'
14547 3' -52.5 NC_003521.1 + 184358 0.66 0.993617
Target:  5'- cGGGCGGGCCGUggcgcggcGCC-UCucgGACc -3'
miRNA:   3'- -UCCGCCCGGUAaa------UGGcAGuaaCUGc -5'
14547 3' -52.5 NC_003521.1 + 103778 0.66 0.993252
Target:  5'- cGGGCGGuGCCugagucagccGCCGgUUAUUGACc -3'
miRNA:   3'- -UCCGCC-CGGuaaa------UGGC-AGUAACUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.