miRNA display CGI


Results 1 - 20 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14560 3' -62.8 NC_003521.1 + 123922 0.66 0.772109
Target:  5'- aGCGAaaGGGGUcucccGC-CGGCGCGCc-- -3'
miRNA:   3'- aCGCUggCCCCG-----CGaGCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 19657 0.66 0.772109
Target:  5'- gUGUGcCUGGGGCuGCU----GCGCUGGg -3'
miRNA:   3'- -ACGCuGGCCCCG-CGAgcugCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 76388 0.66 0.772109
Target:  5'- cGCGGCCgcGGuGGCGCUgcuagcaccagCGGCgguguggugGUGCUGGc -3'
miRNA:   3'- aCGCUGG--CC-CCGCGA-----------GCUG---------CGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 228052 0.66 0.772109
Target:  5'- gGUaAUCGGGGCGC---ACGCGCgGGu -3'
miRNA:   3'- aCGcUGGCCCCGCGagcUGCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 21765 0.66 0.772109
Target:  5'- aUGC-ACCuGGGCGC-CGugGCGUg-- -3'
miRNA:   3'- -ACGcUGGcCCCGCGaGCugCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 197280 0.66 0.772109
Target:  5'- gGCGGCgGGGaGCgggagggcgGCUCGACGgGagagGGg -3'
miRNA:   3'- aCGCUGgCCC-CG---------CGAGCUGCgCga--CC- -5'
14560 3' -62.8 NC_003521.1 + 154126 0.66 0.772109
Target:  5'- cGCGGCCGGGcaagggcggcaGCGCcagcgucuucuuUCGGCGCGa--- -3'
miRNA:   3'- aCGCUGGCCC-----------CGCG------------AGCUGCGCgacc -5'
14560 3' -62.8 NC_003521.1 + 137392 0.66 0.772109
Target:  5'- cGCGACCuGGcGGaGCucacgcacgUCGACGCGCa-- -3'
miRNA:   3'- aCGCUGG-CC-CCgCG---------AGCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 47246 0.66 0.772109
Target:  5'- cGCGACCGGGuGauCUgCGAgGUGgUGGc -3'
miRNA:   3'- aCGCUGGCCC-CgcGA-GCUgCGCgACC- -5'
14560 3' -62.8 NC_003521.1 + 185095 0.66 0.772109
Target:  5'- cGCGcGCUGGgaGGCGCUgcgcgcCGACaUGCUGGa -3'
miRNA:   3'- aCGC-UGGCC--CCGCGA------GCUGcGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 181216 0.66 0.76952
Target:  5'- cGCcGCCGGGGCcgccGCcacuaccguccuucUUGGCGCGCUucucGGa -3'
miRNA:   3'- aCGcUGGCCCCG----CG--------------AGCUGCGCGA----CC- -5'
14560 3' -62.8 NC_003521.1 + 141199 0.66 0.763443
Target:  5'- gGUGGCCGuGGCGCUgCGccgccGgGCGCUGc -3'
miRNA:   3'- aCGCUGGCcCCGCGA-GC-----UgCGCGACc -5'
14560 3' -62.8 NC_003521.1 + 180392 0.66 0.763443
Target:  5'- gGCG-CCGGaGUacuGCUgGugGUGCUGGc -3'
miRNA:   3'- aCGCuGGCCcCG---CGAgCugCGCGACC- -5'
14560 3' -62.8 NC_003521.1 + 36246 0.66 0.763443
Target:  5'- -cCGACUGccGGCGCgCGACGUGgUGGa -3'
miRNA:   3'- acGCUGGCc-CCGCGaGCUGCGCgACC- -5'
14560 3' -62.8 NC_003521.1 + 103309 0.66 0.763443
Target:  5'- cGCG-CCGGuacuccagcaGGCGCU-GACGCGCc-- -3'
miRNA:   3'- aCGCuGGCC----------CCGCGAgCUGCGCGacc -5'
14560 3' -62.8 NC_003521.1 + 138710 0.66 0.763443
Target:  5'- gGCGGCaCGGGcGCugGCUgGugGUGCguccGGa -3'
miRNA:   3'- aCGCUG-GCCC-CG--CGAgCugCGCGa---CC- -5'
14560 3' -62.8 NC_003521.1 + 224797 0.66 0.763443
Target:  5'- cGuCGugCGGGaCGCgCGugGCGUaGGg -3'
miRNA:   3'- aC-GCugGCCCcGCGaGCugCGCGaCC- -5'
14560 3' -62.8 NC_003521.1 + 155261 0.66 0.763443
Target:  5'- gGCGGCggCGGcGGCGcCUCaGGCccguCGCUGGg -3'
miRNA:   3'- aCGCUG--GCC-CCGC-GAG-CUGc---GCGACC- -5'
14560 3' -62.8 NC_003521.1 + 218233 0.66 0.763443
Target:  5'- gGCGACCgcaGGGGcCGUcacgggugCGACGCGUcaGGa -3'
miRNA:   3'- aCGCUGG---CCCC-GCGa-------GCUGCGCGa-CC- -5'
14560 3' -62.8 NC_003521.1 + 166643 0.66 0.763443
Target:  5'- cGCGcGCC-GGGCGCcgCGGCGCaGC-GGc -3'
miRNA:   3'- aCGC-UGGcCCCGCGa-GCUGCG-CGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.