miRNA display CGI


Results 1 - 20 of 187 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14585 5' -52.6 NC_003521.1 + 281 0.66 0.995994
Target:  5'- cGCUGCgCGGauAGACuAGGG-UGGUAGGg -3'
miRNA:   3'- -CGGCG-GCUacUUUG-UCCCuAUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 56244 0.66 0.995994
Target:  5'- uGCCauGUCGGggcUGAGGCAGGcc-GGCAGGc -3'
miRNA:   3'- -CGG--CGGCU---ACUUUGUCCcuaUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 155383 0.66 0.995993
Target:  5'- cGCCGgCGcgGAcgacgaggccGGCGGGGGgcugGGCAccGGa -3'
miRNA:   3'- -CGGCgGCuaCU----------UUGUCCCUa---UCGU--CC- -5'
14585 5' -52.6 NC_003521.1 + 40603 0.66 0.995993
Target:  5'- cGCUGCgCGGauAGACuAGGG-UGGUAGGg -3'
miRNA:   3'- -CGGCG-GCUacUUUG-UCCCuAUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 179462 0.66 0.995347
Target:  5'- aGCUGuuGcagGAAGCGGGccgugGGCAGGu -3'
miRNA:   3'- -CGGCggCua-CUUUGUCCcua--UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 13880 0.66 0.995347
Target:  5'- cGCCGCC-AUGGAuuucgcCGGGGGgcccGGCGcGGa -3'
miRNA:   3'- -CGGCGGcUACUUu-----GUCCCUa---UCGU-CC- -5'
14585 5' -52.6 NC_003521.1 + 44509 0.66 0.995347
Target:  5'- aGCCGCCGucgu--CAGGcGgcGCAGGg -3'
miRNA:   3'- -CGGCGGCuacuuuGUCCcUauCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 119809 0.66 0.995347
Target:  5'- cGCCGCCGAgGAggUcuGGAgcAGCGGc -3'
miRNA:   3'- -CGGCGGCUaCUuuGucCCUa-UCGUCc -5'
14585 5' -52.6 NC_003521.1 + 177926 0.66 0.995347
Target:  5'- cGUCGUCGGgaGGGAUGGGGAgUGGCcGGu -3'
miRNA:   3'- -CGGCGGCUa-CUUUGUCCCU-AUCGuCC- -5'
14585 5' -52.6 NC_003521.1 + 119077 0.66 0.995347
Target:  5'- aCCaGUCGGgcAAGCAGGuGUGGCAGGc -3'
miRNA:   3'- cGG-CGGCUacUUUGUCCcUAUCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 111193 0.66 0.995347
Target:  5'- cGCCGCggaCGGUGGGcUGGGcGAUGGCGccGGa -3'
miRNA:   3'- -CGGCG---GCUACUUuGUCC-CUAUCGU--CC- -5'
14585 5' -52.6 NC_003521.1 + 117768 0.66 0.995347
Target:  5'- cGCCGCCGucccAGCAGcauGGUGGCGGcGg -3'
miRNA:   3'- -CGGCGGCuacuUUGUCc--CUAUCGUC-C- -5'
14585 5' -52.6 NC_003521.1 + 32682 0.66 0.995347
Target:  5'- aGCUGCCGGaucGAGgcgccACGGGGcuaauAUAGCuAGGg -3'
miRNA:   3'- -CGGCGGCUa--CUU-----UGUCCC-----UAUCG-UCC- -5'
14585 5' -52.6 NC_003521.1 + 54481 0.66 0.995347
Target:  5'- uGCCGCaguaCGAUGAGuauCcGGGAcaUAGgAGGa -3'
miRNA:   3'- -CGGCG----GCUACUUu--GuCCCU--AUCgUCC- -5'
14585 5' -52.6 NC_003521.1 + 160508 0.66 0.995347
Target:  5'- aCCGCgGcgGGAGgAGGGGgcGGCAGc -3'
miRNA:   3'- cGGCGgCuaCUUUgUCCCUa-UCGUCc -5'
14585 5' -52.6 NC_003521.1 + 38004 0.66 0.995278
Target:  5'- aGUCGCCGGcgcUGAGGCGGGuuuguucGAcGGCGGu -3'
miRNA:   3'- -CGGCGGCU---ACUUUGUCC-------CUaUCGUCc -5'
14585 5' -52.6 NC_003521.1 + 89643 0.66 0.99492
Target:  5'- cGCgGCCGA-GGAGCAGgacggcacagaggaaGGAgagaggacAGCAGGa -3'
miRNA:   3'- -CGgCGGCUaCUUUGUC---------------CCUa-------UCGUCC- -5'
14585 5' -52.6 NC_003521.1 + 212027 0.66 0.994618
Target:  5'- gGCCGUCGGUGAcgGGCuugucGGAgcGCAGa -3'
miRNA:   3'- -CGGCGGCUACU--UUGuc---CCUauCGUCc -5'
14585 5' -52.6 NC_003521.1 + 10496 0.66 0.994618
Target:  5'- -gCGCCG-----GCGGGGAUGGCGuGGc -3'
miRNA:   3'- cgGCGGCuacuuUGUCCCUAUCGU-CC- -5'
14585 5' -52.6 NC_003521.1 + 215622 0.66 0.994618
Target:  5'- gGCCGUcuuguCGGUGAgGACGGGGcUccgcauggucgcGGCGGGa -3'
miRNA:   3'- -CGGCG-----GCUACU-UUGUCCCuA------------UCGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.