Results 1 - 20 of 663 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
14588 | 3' | -60.8 | NC_003521.1 | + | 68688 | 0.65 | 0.831556 |
Target: 5'- gCGgCCAuGUGCcgcGACgaacucaugaccguGGCGCCGuCGGCCg -3' miRNA: 3'- -GCgGGUcCACG---UUG--------------UCGCGGU-GCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 73945 | 0.66 | 0.829192 |
Target: 5'- gCGCCCGcGGacuugauguacgaccUGCGcccGCcGCGCCACcGCCu -3' miRNA: 3'- -GCGGGU-CC---------------ACGU---UGuCGCGGUGcCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 53175 | 0.66 | 0.829192 |
Target: 5'- nCGCCCucgccgaugaagauGGc-CAGCGGCG-CGCGGCCc -3' miRNA: 3'- -GCGGGu-------------CCacGUUGUCGCgGUGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 196658 | 0.66 | 0.826016 |
Target: 5'- aCGUCCagcuGGGUGC-GCAGguccaccaggaUGUCGCGGCUg -3' miRNA: 3'- -GCGGG----UCCACGuUGUC-----------GCGGUGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 29861 | 0.66 | 0.826016 |
Target: 5'- aCGCCCGGGacGCAGaAG-GCCGUGGCg -3' miRNA: 3'- -GCGGGUCCa-CGUUgUCgCGGUGCCGg -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 111846 | 0.66 | 0.826016 |
Target: 5'- uGCCCAGcaucGUcuuuuucCAGCGCCACGccGCCa -3' miRNA: 3'- gCGGGUCca--CGuu-----GUCGCGGUGC--CGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 15158 | 0.66 | 0.826016 |
Target: 5'- aCGCCUuGGUGCuGCAcCGCUACGacaCCa -3' miRNA: 3'- -GCGGGuCCACGuUGUcGCGGUGCc--GG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 117236 | 0.66 | 0.826016 |
Target: 5'- gGCCgCGGcG-GCuccCGGCGCCGCcGCCa -3' miRNA: 3'- gCGG-GUC-CaCGuu-GUCGCGGUGcCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 58767 | 0.66 | 0.826016 |
Target: 5'- gGUCCAGccacUGCAggGCGGCGCgCGcCGGCg -3' miRNA: 3'- gCGGGUCc---ACGU--UGUCGCG-GU-GCCGg -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 210677 | 0.66 | 0.826016 |
Target: 5'- aCGCCCAGacacagGCAACAGgaacugaccgaCGCCAUguuugaGGCUg -3' miRNA: 3'- -GCGGGUCca----CGUUGUC-----------GCGGUG------CCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 171630 | 0.66 | 0.826016 |
Target: 5'- cCGCCgacguCGGGUauGUcuAGC-GCGCCGCGGCg -3' miRNA: 3'- -GCGG-----GUCCA--CG--UUGuCGCGGUGCCGg -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 165033 | 0.66 | 0.826016 |
Target: 5'- aGCau-GGUGCugccGCGGCGUCugcaccuggagGCGGCCu -3' miRNA: 3'- gCGgguCCACGu---UGUCGCGG-----------UGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 102920 | 0.66 | 0.826016 |
Target: 5'- aGCCaCGGGUacgguuugaggGCcgaGGCGUCGCGGUCc -3' miRNA: 3'- gCGG-GUCCA-----------CGuugUCGCGGUGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 43990 | 0.66 | 0.826016 |
Target: 5'- uGCUCGGGguuCGugGGCcugcucaaCCACGGCCu -3' miRNA: 3'- gCGGGUCCac-GUugUCGc-------GGUGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 46278 | 0.66 | 0.826016 |
Target: 5'- gCGCagAGGUGCAugACGGagcuguugucCGCCAaGGCCu -3' miRNA: 3'- -GCGggUCCACGU--UGUC----------GCGGUgCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 61836 | 0.66 | 0.826016 |
Target: 5'- gGCCCuGG---GAgGGCGCCGCGGaaCCg -3' miRNA: 3'- gCGGGuCCacgUUgUCGCGGUGCC--GG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 127051 | 0.66 | 0.826016 |
Target: 5'- -aCCgAGGaUGgAgacGCGGUGCCGCGGCa -3' miRNA: 3'- gcGGgUCC-ACgU---UGUCGCGGUGCCGg -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 118184 | 0.66 | 0.826016 |
Target: 5'- aCGCCCgccggcaaagucGGG-GCcGCcgAGCG-CGCGGCCg -3' miRNA: 3'- -GCGGG------------UCCaCGuUG--UCGCgGUGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 122917 | 0.66 | 0.826016 |
Target: 5'- cCGCCguGGUucuugaGCuuuuuCcGCGCC-CGGCCg -3' miRNA: 3'- -GCGGguCCA------CGuu---GuCGCGGuGCCGG- -5' |
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14588 | 3' | -60.8 | NC_003521.1 | + | 31130 | 0.66 | 0.826016 |
Target: 5'- gCGCCUguucGUGgAGCAGCGUUACGuGCUc -3' miRNA: 3'- -GCGGGuc--CACgUUGUCGCGGUGC-CGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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