miRNA display CGI


Results 1 - 20 of 663 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14588 3' -60.8 NC_003521.1 + 68688 0.65 0.831556
Target:  5'- gCGgCCAuGUGCcgcGACgaacucaugaccguGGCGCCGuCGGCCg -3'
miRNA:   3'- -GCgGGUcCACG---UUG--------------UCGCGGU-GCCGG- -5'
14588 3' -60.8 NC_003521.1 + 73945 0.66 0.829192
Target:  5'- gCGCCCGcGGacuugauguacgaccUGCGcccGCcGCGCCACcGCCu -3'
miRNA:   3'- -GCGGGU-CC---------------ACGU---UGuCGCGGUGcCGG- -5'
14588 3' -60.8 NC_003521.1 + 53175 0.66 0.829192
Target:  5'- nCGCCCucgccgaugaagauGGc-CAGCGGCG-CGCGGCCc -3'
miRNA:   3'- -GCGGGu-------------CCacGUUGUCGCgGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 43990 0.66 0.826016
Target:  5'- uGCUCGGGguuCGugGGCcugcucaaCCACGGCCu -3'
miRNA:   3'- gCGGGUCCac-GUugUCGc-------GGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 111846 0.66 0.826016
Target:  5'- uGCCCAGcaucGUcuuuuucCAGCGCCACGccGCCa -3'
miRNA:   3'- gCGGGUCca--CGuu-----GUCGCGGUGC--CGG- -5'
14588 3' -60.8 NC_003521.1 + 165033 0.66 0.826016
Target:  5'- aGCau-GGUGCugccGCGGCGUCugcaccuggagGCGGCCu -3'
miRNA:   3'- gCGgguCCACGu---UGUCGCGG-----------UGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 196658 0.66 0.826016
Target:  5'- aCGUCCagcuGGGUGC-GCAGguccaccaggaUGUCGCGGCUg -3'
miRNA:   3'- -GCGGG----UCCACGuUGUC-----------GCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 102920 0.66 0.826016
Target:  5'- aGCCaCGGGUacgguuugaggGCcgaGGCGUCGCGGUCc -3'
miRNA:   3'- gCGG-GUCCA-----------CGuugUCGCGGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 210677 0.66 0.826016
Target:  5'- aCGCCCAGacacagGCAACAGgaacugaccgaCGCCAUguuugaGGCUg -3'
miRNA:   3'- -GCGGGUCca----CGUUGUC-----------GCGGUG------CCGG- -5'
14588 3' -60.8 NC_003521.1 + 117236 0.66 0.826016
Target:  5'- gGCCgCGGcG-GCuccCGGCGCCGCcGCCa -3'
miRNA:   3'- gCGG-GUC-CaCGuu-GUCGCGGUGcCGG- -5'
14588 3' -60.8 NC_003521.1 + 31130 0.66 0.826016
Target:  5'- gCGCCUguucGUGgAGCAGCGUUACGuGCUc -3'
miRNA:   3'- -GCGGGuc--CACgUUGUCGCGGUGC-CGG- -5'
14588 3' -60.8 NC_003521.1 + 58767 0.66 0.826016
Target:  5'- gGUCCAGccacUGCAggGCGGCGCgCGcCGGCg -3'
miRNA:   3'- gCGGGUCc---ACGU--UGUCGCG-GU-GCCGg -5'
14588 3' -60.8 NC_003521.1 + 127051 0.66 0.826016
Target:  5'- -aCCgAGGaUGgAgacGCGGUGCCGCGGCa -3'
miRNA:   3'- gcGGgUCC-ACgU---UGUCGCGGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 46278 0.66 0.826016
Target:  5'- gCGCagAGGUGCAugACGGagcuguugucCGCCAaGGCCu -3'
miRNA:   3'- -GCGggUCCACGU--UGUC----------GCGGUgCCGG- -5'
14588 3' -60.8 NC_003521.1 + 15158 0.66 0.826016
Target:  5'- aCGCCUuGGUGCuGCAcCGCUACGacaCCa -3'
miRNA:   3'- -GCGGGuCCACGuUGUcGCGGUGCc--GG- -5'
14588 3' -60.8 NC_003521.1 + 61836 0.66 0.826016
Target:  5'- gGCCCuGG---GAgGGCGCCGCGGaaCCg -3'
miRNA:   3'- gCGGGuCCacgUUgUCGCGGUGCC--GG- -5'
14588 3' -60.8 NC_003521.1 + 118184 0.66 0.826016
Target:  5'- aCGCCCgccggcaaagucGGG-GCcGCcgAGCG-CGCGGCCg -3'
miRNA:   3'- -GCGGG------------UCCaCGuUG--UCGCgGUGCCGG- -5'
14588 3' -60.8 NC_003521.1 + 171630 0.66 0.826016
Target:  5'- cCGCCgacguCGGGUauGUcuAGC-GCGCCGCGGCg -3'
miRNA:   3'- -GCGG-----GUCCA--CG--UUGuCGCGGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 194775 0.66 0.826016
Target:  5'- cCGCCC-GGUGC--CAaCGUCAUGGCg -3'
miRNA:   3'- -GCGGGuCCACGuuGUcGCGGUGCCGg -5'
14588 3' -60.8 NC_003521.1 + 122917 0.66 0.826016
Target:  5'- cCGCCguGGUucuugaGCuuuuuCcGCGCC-CGGCCg -3'
miRNA:   3'- -GCGGguCCA------CGuu---GuCGCGGuGCCGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.