miRNA display CGI


Results 1 - 20 of 390 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 3' -58.9 NC_003521.1 + 91897 0.66 0.909631
Target:  5'- gCCAgCACgGCgCUGC-GGUGCucgauGCCGCg -3'
miRNA:   3'- gGGUaGUGgUG-GGCGaCCACG-----UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 68192 0.66 0.909631
Target:  5'- uCCCGUgCGCuucguuuaCACaCCGCuagUGGUGUauacGCCGCa -3'
miRNA:   3'- -GGGUA-GUG--------GUG-GGCG---ACCACG----UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 152727 0.66 0.909631
Target:  5'- cUCCAugaacuUCGCCgagugGCCCG-UGGUcacggGCGCCGCc -3'
miRNA:   3'- -GGGU------AGUGG-----UGGGCgACCA-----CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 126992 0.66 0.909631
Target:  5'- cCCCGcugcCGCUGCCCGaCguggcGGUGCccgacgacgccGCCGCg -3'
miRNA:   3'- -GGGUa---GUGGUGGGC-Ga----CCACG-----------UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 239367 0.66 0.909631
Target:  5'- gUCCGUCcCCuugUCCGCUGGuUGCuagGCgGCg -3'
miRNA:   3'- -GGGUAGuGGu--GGGCGACC-ACG---UGgCG- -5'
14590 3' -58.9 NC_003521.1 + 137073 0.66 0.909631
Target:  5'- cCUgGUCuacuuCCACCaCGCggcGGUGCugCGg -3'
miRNA:   3'- -GGgUAGu----GGUGG-GCGa--CCACGugGCg -5'
14590 3' -58.9 NC_003521.1 + 37086 0.66 0.909631
Target:  5'- aCCAUCuCCACCuCGUac-UGCcACCGCg -3'
miRNA:   3'- gGGUAGuGGUGG-GCGaccACG-UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 136844 0.66 0.909631
Target:  5'- gCCGucuUCACCACCCug-GGccUGCGCUGUc -3'
miRNA:   3'- gGGU---AGUGGUGGGcgaCC--ACGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 17993 0.66 0.909631
Target:  5'- -gUAUCGCCACCCGCaGa--CGCCGUu -3'
miRNA:   3'- ggGUAGUGGUGGGCGaCcacGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 116799 0.66 0.909631
Target:  5'- gCCGUCuacgGCCGcgacCCCGaCUGG-GUGCUGCa -3'
miRNA:   3'- gGGUAG----UGGU----GGGC-GACCaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 152776 0.66 0.909631
Target:  5'- -gCGUCGCCuCCUGCgccuuGcGCACCGCc -3'
miRNA:   3'- ggGUAGUGGuGGGCGac---CaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 131652 0.66 0.909631
Target:  5'- aCCCAUCguggcgGCCuucaacauCUCGCUGGaGgACUGCg -3'
miRNA:   3'- -GGGUAG------UGGu-------GGGCGACCaCgUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 123684 0.66 0.909631
Target:  5'- gCCAUCugCGCCagcuGCUGGUcgaucaucgaGCGCaCGa -3'
miRNA:   3'- gGGUAGugGUGGg---CGACCA----------CGUG-GCg -5'
14590 3' -58.9 NC_003521.1 + 153929 0.66 0.909631
Target:  5'- uUCCAcuccUCgGCCACCCGCc---GCGCCGUc -3'
miRNA:   3'- -GGGU----AG-UGGUGGGCGaccaCGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 235261 0.66 0.909631
Target:  5'- uUCCAcCGCCgaGCCCGCaaccGGgaggaacgacGCGCCGCc -3'
miRNA:   3'- -GGGUaGUGG--UGGGCGa---CCa---------CGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 107606 0.66 0.909631
Target:  5'- gCCAUCGCCccugaACCCGCgccccgACCGCg -3'
miRNA:   3'- gGGUAGUGG-----UGGGCGaccacgUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 143184 0.66 0.909631
Target:  5'- aCCCggCGCCGCCgCGaacgucgagcCUGagcacgacgacGUGCACUGCa -3'
miRNA:   3'- -GGGuaGUGGUGG-GC----------GAC-----------CACGUGGCG- -5'
14590 3' -58.9 NC_003521.1 + 71388 0.66 0.909631
Target:  5'- aCCCGcuguUCgaggACCGCCUGCUGGccUACgGCg -3'
miRNA:   3'- -GGGU----AG----UGGUGGGCGACCacGUGgCG- -5'
14590 3' -58.9 NC_003521.1 + 149383 0.66 0.909631
Target:  5'- cCUCGUCACC-CCCG-UGG-GCuucgugGCCGUg -3'
miRNA:   3'- -GGGUAGUGGuGGGCgACCaCG------UGGCG- -5'
14590 3' -58.9 NC_003521.1 + 129893 0.66 0.909631
Target:  5'- aCCCAgugCACCAacggcaCCGUgcGGaacaGCACCGUg -3'
miRNA:   3'- -GGGUa--GUGGUg-----GGCGa-CCa---CGUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.