miRNA display CGI


Results 1 - 20 of 543 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14590 5' -54.6 NC_003521.1 + 70208 0.66 0.983162
Target:  5'- cGGGUcGGCccuCGAAGcgcuuGGCgCGCAGCAGg -3'
miRNA:   3'- -CCUA-CCGcu-GCUUC-----UCG-GUGUCGUCg -5'
14590 5' -54.6 NC_003521.1 + 148630 0.66 0.983162
Target:  5'- cGGccgGGCGGCGAAaaacggccccGAGCU-CGGCGGg -3'
miRNA:   3'- -CCua-CCGCUGCUU----------CUCGGuGUCGUCg -5'
14590 5' -54.6 NC_003521.1 + 69307 0.66 0.983162
Target:  5'- -aGUGGUcACGAAGAGaggggucuCCACAGUgucAGCg -3'
miRNA:   3'- ccUACCGcUGCUUCUC--------GGUGUCG---UCG- -5'
14590 5' -54.6 NC_003521.1 + 226594 0.66 0.983162
Target:  5'- aGGAUcaCGGCGu--AGCC-CAGCGGCg -3'
miRNA:   3'- -CCUAccGCUGCuucUCGGuGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 164048 0.66 0.983162
Target:  5'- uGGUGGUGGCcuc-GGCCACGGCGa- -3'
miRNA:   3'- cCUACCGCUGcuucUCGGUGUCGUcg -5'
14590 5' -54.6 NC_003521.1 + 196456 0.66 0.983162
Target:  5'- ---cGGCcucgGGCGu-GGGCCGCAGCcccAGCg -3'
miRNA:   3'- ccuaCCG----CUGCuuCUCGGUGUCG---UCG- -5'
14590 5' -54.6 NC_003521.1 + 119322 0.66 0.983162
Target:  5'- cGGAUGGUGAUGc---GCaCGCGGUcgGGCa -3'
miRNA:   3'- -CCUACCGCUGCuucuCG-GUGUCG--UCG- -5'
14590 5' -54.6 NC_003521.1 + 151813 0.66 0.983162
Target:  5'- -cGUGGCGcCGGuGGGGCC-C-GCGGCa -3'
miRNA:   3'- ccUACCGCuGCU-UCUCGGuGuCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 86384 0.66 0.983162
Target:  5'- cGGAaGGgGAaGAAGGGCC--AGCGGUc -3'
miRNA:   3'- -CCUaCCgCUgCUUCUCGGugUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 34909 0.66 0.983162
Target:  5'- ---aGGCGcccuCGAAGcGCaGCAGUAGCg -3'
miRNA:   3'- ccuaCCGCu---GCUUCuCGgUGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 117220 0.66 0.983162
Target:  5'- cGGcgGcugccccuGCGACGcAAGGGCaCGCAucacGCGGCg -3'
miRNA:   3'- -CCuaC--------CGCUGC-UUCUCG-GUGU----CGUCG- -5'
14590 5' -54.6 NC_003521.1 + 186847 0.66 0.983162
Target:  5'- -aAUGGCGGCccAGcGGCgGCGuGCAGCa -3'
miRNA:   3'- ccUACCGCUGcuUC-UCGgUGU-CGUCG- -5'
14590 5' -54.6 NC_003521.1 + 86070 0.66 0.983162
Target:  5'- ---cGGCGAUGAccGGCCAguaggcCAGCAGa -3'
miRNA:   3'- ccuaCCGCUGCUucUCGGU------GUCGUCg -5'
14590 5' -54.6 NC_003521.1 + 27035 0.66 0.983162
Target:  5'- aGGc--GCGGCGcAGGGGCCgaaAGUAGCg -3'
miRNA:   3'- -CCuacCGCUGC-UUCUCGGug-UCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 192452 0.66 0.983162
Target:  5'- gGGcAUGGCGGCGGc--GCCgguuuccaggACGGCGGUc -3'
miRNA:   3'- -CC-UACCGCUGCUucuCGG----------UGUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 74139 0.66 0.983162
Target:  5'- aGGAcgacgUGGCG-CGccacGGGGCC-CAGguGCc -3'
miRNA:   3'- -CCU-----ACCGCuGCu---UCUCGGuGUCguCG- -5'
14590 5' -54.6 NC_003521.1 + 137477 0.66 0.983162
Target:  5'- uGGAagGGCGcCGgcGuGUCGCGGCGccGCg -3'
miRNA:   3'- -CCUa-CCGCuGCuuCuCGGUGUCGU--CG- -5'
14590 5' -54.6 NC_003521.1 + 80028 0.66 0.982975
Target:  5'- aGAaGuaGACGAAGAcccgcgcccgcguGCCGcCGGCGGCa -3'
miRNA:   3'- cCUaCcgCUGCUUCU-------------CGGU-GUCGUCG- -5'
14590 5' -54.6 NC_003521.1 + 29257 0.66 0.982975
Target:  5'- ---cGGCGACGAccAGCCGCucuucaugaguacGGgGGCg -3'
miRNA:   3'- ccuaCCGCUGCUucUCGGUG-------------UCgUCG- -5'
14590 5' -54.6 NC_003521.1 + 116858 0.66 0.982594
Target:  5'- cGAccGCGACGAccugcgcgcgcaguGGcgcGGCUGCGGCGGCg -3'
miRNA:   3'- cCUacCGCUGCU--------------UC---UCGGUGUCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.