miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 3' -59.5 NC_003521.1 + 206664 0.66 0.886261
Target:  5'- gCCcgCGACCucaAGGCCuucgugcgcguGGGCC--UGGCCc -3'
miRNA:   3'- -GGuaGUUGG---UCCGG-----------UCCGGgcACCGG- -5'
14591 3' -59.5 NC_003521.1 + 194270 0.66 0.886261
Target:  5'- aCCGcuUCAGcacCCGGcGCgAGGCCCugGUGcGCCu -3'
miRNA:   3'- -GGU--AGUU---GGUC-CGgUCCGGG--CAC-CGG- -5'
14591 3' -59.5 NC_003521.1 + 28638 0.66 0.886261
Target:  5'- uUCAUCAACUAcuauuaCCAGGCCC-UGGgCa -3'
miRNA:   3'- -GGUAGUUGGUcc----GGUCCGGGcACCgG- -5'
14591 3' -59.5 NC_003521.1 + 222168 0.66 0.886261
Target:  5'- cCCcgUGGCCAG--CAGGUCCGUgcGGCCc -3'
miRNA:   3'- -GGuaGUUGGUCcgGUCCGGGCA--CCGG- -5'
14591 3' -59.5 NC_003521.1 + 90409 0.66 0.886261
Target:  5'- gCAcgCGACagaCGGGuCCGGGCUCGUcGCCg -3'
miRNA:   3'- gGUa-GUUG---GUCC-GGUCCGGGCAcCGG- -5'
14591 3' -59.5 NC_003521.1 + 213430 0.66 0.886261
Target:  5'- aCAaCAACCAcgagauccccguGGCCuGGCCCcccGGCUg -3'
miRNA:   3'- gGUaGUUGGU------------CCGGuCCGGGca-CCGG- -5'
14591 3' -59.5 NC_003521.1 + 41626 0.66 0.886261
Target:  5'- aCCGUgGuCUGGGgCguGGcGCCCGUGGUCa -3'
miRNA:   3'- -GGUAgUuGGUCCgG--UC-CGGGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 13884 0.66 0.886261
Target:  5'- gCCAUgGauuucGCCGGG--GGGCCCGgcgcggagggGGCCg -3'
miRNA:   3'- -GGUAgU-----UGGUCCggUCCGGGCa---------CCGG- -5'
14591 3' -59.5 NC_003521.1 + 134392 0.66 0.886261
Target:  5'- uCCA-CGGCCAGcGCCuuG-UCGUGGCCc -3'
miRNA:   3'- -GGUaGUUGGUC-CGGucCgGGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 115369 0.66 0.886261
Target:  5'- gCGUCGcugGCCAgGGCCggcaugugcaGGGCgCGggcGGCCg -3'
miRNA:   3'- gGUAGU---UGGU-CCGG----------UCCGgGCa--CCGG- -5'
14591 3' -59.5 NC_003521.1 + 117037 0.66 0.886261
Target:  5'- aCGUCAagGCCAGuGUUucGCCCGaggcGGCCg -3'
miRNA:   3'- gGUAGU--UGGUC-CGGucCGGGCa---CCGG- -5'
14591 3' -59.5 NC_003521.1 + 204230 0.66 0.885611
Target:  5'- gUCGUCGGCCAcccgccGCCAGGCCaGUucgcgcauggggaGGCUg -3'
miRNA:   3'- -GGUAGUUGGUc-----CGGUCCGGgCA-------------CCGG- -5'
14591 3' -59.5 NC_003521.1 + 45380 0.66 0.885611
Target:  5'- gUCGUCAuCCAcgucaucGGCCGccucuucgucGG-CCGUGGCCu -3'
miRNA:   3'- -GGUAGUuGGU-------CCGGU----------CCgGGCACCGG- -5'
14591 3' -59.5 NC_003521.1 + 235082 0.66 0.879668
Target:  5'- cUCGUCAugACCAugacacGcGCCGuGCCCG-GGCCg -3'
miRNA:   3'- -GGUAGU--UGGU------C-CGGUcCGGGCaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 17008 0.66 0.879668
Target:  5'- gCCcgCGgugGCgGcGGCgCAGGCCCGUcgucuggcGGCCc -3'
miRNA:   3'- -GGuaGU---UGgU-CCG-GUCCGGGCA--------CCGG- -5'
14591 3' -59.5 NC_003521.1 + 134713 0.66 0.879668
Target:  5'- cCCA-CGGCCGccacGCCcuGCCCGaGGCCu -3'
miRNA:   3'- -GGUaGUUGGUc---CGGucCGGGCaCCGG- -5'
14591 3' -59.5 NC_003521.1 + 28806 0.66 0.879668
Target:  5'- cCCGUC-ACCGacGGCCAGuaCC-UGGCg -3'
miRNA:   3'- -GGUAGuUGGU--CCGGUCcgGGcACCGg -5'
14591 3' -59.5 NC_003521.1 + 89161 0.66 0.879668
Target:  5'- cCCuggaCGGCUGGGCCguGGGCC--UGGCCc -3'
miRNA:   3'- -GGua--GUUGGUCCGG--UCCGGgcACCGG- -5'
14591 3' -59.5 NC_003521.1 + 87780 0.66 0.872879
Target:  5'- gCCAg-GGCCAGGUgcugAGGCCCGUaGCg -3'
miRNA:   3'- -GGUagUUGGUCCGg---UCCGGGCAcCGg -5'
14591 3' -59.5 NC_003521.1 + 77561 0.66 0.872879
Target:  5'- uCCGacgaGACCGGcGUCaAGGCguugaagaccgCCGUGGCCg -3'
miRNA:   3'- -GGUag--UUGGUC-CGG-UCCG-----------GGCACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.