miRNA display CGI


Results 1 - 20 of 128 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14591 5' -58.9 NC_003521.1 + 89163 0.66 0.887508
Target:  5'- cUGGaCGGCuGGGCC--GUGGGCCUGg -3'
miRNA:   3'- uACCgGCUGcUCUGGugCAUCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 213493 0.66 0.887508
Target:  5'- -aGGUgGACGAGgaguucaaGCCcgaggACGUcaAGGCCUGg -3'
miRNA:   3'- uaCCGgCUGCUC--------UGG-----UGCA--UCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 178751 0.66 0.887508
Target:  5'- cUGGUCGcACGuGGCCugGaAGGUCUu -3'
miRNA:   3'- uACCGGC-UGCuCUGGugCaUCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 130289 0.66 0.887508
Target:  5'- -cGGCUaccugGGCGAGGCCGCGgc-GCCg- -3'
miRNA:   3'- uaCCGG-----CUGCUCUGGUGCaucCGGac -5'
14591 5' -58.9 NC_003521.1 + 10493 0.66 0.887508
Target:  5'- cAUGcGCCGGCgGGGAUgGCGU-GGCCc- -3'
miRNA:   3'- -UAC-CGGCUG-CUCUGgUGCAuCCGGac -5'
14591 5' -58.9 NC_003521.1 + 170841 0.66 0.887508
Target:  5'- --uGCaCGACGAGACgCGCGUcGGCUUc -3'
miRNA:   3'- uacCG-GCUGCUCUG-GUGCAuCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 136399 0.66 0.88085
Target:  5'- -cGGCCG-CG-GGCCGCGUgugAGGCa-- -3'
miRNA:   3'- uaCCGGCuGCuCUGGUGCA---UCCGgac -5'
14591 5' -58.9 NC_003521.1 + 113790 0.66 0.88085
Target:  5'- -cGGCCagcgcGACGGGcACCGCGgcGGCg-- -3'
miRNA:   3'- uaCCGG-----CUGCUC-UGGUGCauCCGgac -5'
14591 5' -58.9 NC_003521.1 + 183783 0.66 0.88085
Target:  5'- -gGGCagGACGAGuGCCugGgcGGCgUGu -3'
miRNA:   3'- uaCCGg-CUGCUC-UGGugCauCCGgAC- -5'
14591 5' -58.9 NC_003521.1 + 46436 0.66 0.88085
Target:  5'- -gGGuauCCGGCGGGGCUGCGgGGGCUg- -3'
miRNA:   3'- uaCC---GGCUGCUCUGGUGCaUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 36872 0.66 0.88085
Target:  5'- -gGGCCGGCaagcggguGACCACGUacGGGCa-- -3'
miRNA:   3'- uaCCGGCUGcu------CUGGUGCA--UCCGgac -5'
14591 5' -58.9 NC_003521.1 + 43429 0.66 0.88085
Target:  5'- cGUGcCCGACGAGgagGCgGCGgcGGcCCUGg -3'
miRNA:   3'- -UACcGGCUGCUC---UGgUGCauCC-GGAC- -5'
14591 5' -58.9 NC_003521.1 + 72965 0.66 0.87399
Target:  5'- --uGCCGACcucaugaagaaGcGGCCGCGggGGGCCUGg -3'
miRNA:   3'- uacCGGCUG-----------CuCUGGUGCa-UCCGGAC- -5'
14591 5' -58.9 NC_003521.1 + 56844 0.66 0.87399
Target:  5'- -cGGCCuaucaGGCG-GACUACG-GGGCCUa -3'
miRNA:   3'- uaCCGG-----CUGCuCUGGUGCaUCCGGAc -5'
14591 5' -58.9 NC_003521.1 + 107303 0.66 0.873293
Target:  5'- gAUGGCCGugagguuGCGAGAUCGCuggcaGUAGGgCUc -3'
miRNA:   3'- -UACCGGC-------UGCUCUGGUG-----CAUCCgGAc -5'
14591 5' -58.9 NC_003521.1 + 185214 0.66 0.871893
Target:  5'- -gGGCCGcGCGGGACUGCGUGuacgacgaggagacGGUgUGg -3'
miRNA:   3'- uaCCGGC-UGCUCUGGUGCAU--------------CCGgAC- -5'
14591 5' -58.9 NC_003521.1 + 153657 0.66 0.87119
Target:  5'- cGUGGaCGACGAGGCCAUGagcuucgucuccgAGGUCg- -3'
miRNA:   3'- -UACCgGCUGCUCUGGUGCa------------UCCGGac -5'
14591 5' -58.9 NC_003521.1 + 168423 0.66 0.86693
Target:  5'- -gGGCgGGCGgcaGGGCCGCGgcggcGGGCgUGa -3'
miRNA:   3'- uaCCGgCUGC---UCUGGUGCa----UCCGgAC- -5'
14591 5' -58.9 NC_003521.1 + 105895 0.66 0.86693
Target:  5'- --uGCCGGgGGcGugUACGUAGGCCg- -3'
miRNA:   3'- uacCGGCUgCU-CugGUGCAUCCGGac -5'
14591 5' -58.9 NC_003521.1 + 103279 0.66 0.86693
Target:  5'- -cGGCCGGCGccgucuCguCGUAGGCCa- -3'
miRNA:   3'- uaCCGGCUGCucu---GguGCAUCCGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.