miRNA display CGI


Results 1 - 20 of 88 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14592 3' -59.5 NC_003521.1 + 217234 0.66 0.849093
Target:  5'- gAGGAUGCaGGcCAGCACCCcCGcGCc -3'
miRNA:   3'- -UUCUGCGaCCaGUCGUGGGcGCuCGu -5'
14592 3' -59.5 NC_003521.1 + 38779 0.66 0.848327
Target:  5'- cAGACaCUGGUCGGUACCaGCGGuugaguggacaacGCAg -3'
miRNA:   3'- uUCUGcGACCAGUCGUGGgCGCU-------------CGU- -5'
14592 3' -59.5 NC_003521.1 + 15031 0.66 0.847559
Target:  5'- gAGGACGcCUGGcacccugacgagCGGCGCgagCGCGAGCGg -3'
miRNA:   3'- -UUCUGC-GACCa-----------GUCGUGg--GCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 44173 0.66 0.841349
Target:  5'- -uGGCGCc-GUCGGUACuCCGCGAGa- -3'
miRNA:   3'- uuCUGCGacCAGUCGUG-GGCGCUCgu -5'
14592 3' -59.5 NC_003521.1 + 39193 0.66 0.841349
Target:  5'- -cGuCGCucuUGGUCAGCGUCCGC-AGCAg -3'
miRNA:   3'- uuCuGCG---ACCAGUCGUGGGCGcUCGU- -5'
14592 3' -59.5 NC_003521.1 + 130745 0.66 0.841349
Target:  5'- cGGGACGU--GUCGGCGggCGCGAGCGc -3'
miRNA:   3'- -UUCUGCGacCAGUCGUggGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 151815 0.66 0.841349
Target:  5'- -uGGCGCcGGU-GGgGCCCGCG-GCAu -3'
miRNA:   3'- uuCUGCGaCCAgUCgUGGGCGCuCGU- -5'
14592 3' -59.5 NC_003521.1 + 239421 0.66 0.841349
Target:  5'- -cGuCGCucuUGGUCAGCGUCCGC-AGCAg -3'
miRNA:   3'- uuCuGCG---ACCAGUCGUGGGCGcUCGU- -5'
14592 3' -59.5 NC_003521.1 + 149628 0.66 0.841349
Target:  5'- -cGGCGCUGGaCGcCGCCgGCGAGg- -3'
miRNA:   3'- uuCUGCGACCaGUcGUGGgCGCUCgu -5'
14592 3' -59.5 NC_003521.1 + 163309 0.66 0.833429
Target:  5'- -cGGCGUguccacGGUCAGCGgC-GCGAGCGg -3'
miRNA:   3'- uuCUGCGa-----CCAGUCGUgGgCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 170848 0.66 0.833429
Target:  5'- cGAGACGC-GcGUCGGCuucUCCGCGGGg- -3'
miRNA:   3'- -UUCUGCGaC-CAGUCGu--GGGCGCUCgu -5'
14592 3' -59.5 NC_003521.1 + 210718 0.66 0.833429
Target:  5'- -uGAgGCUGGcaaccagcccUCGGCGCugcuaCCGUGAGCGg -3'
miRNA:   3'- uuCUgCGACC----------AGUCGUG-----GGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 192809 0.66 0.833429
Target:  5'- cGGAuCGCUGG-CAGCAgCCGCaGaAGCc -3'
miRNA:   3'- uUCU-GCGACCaGUCGUgGGCG-C-UCGu -5'
14592 3' -59.5 NC_003521.1 + 59659 0.66 0.833429
Target:  5'- cAGACGCUGG-C-GCGCCUGgagGAGCu -3'
miRNA:   3'- uUCUGCGACCaGuCGUGGGCg--CUCGu -5'
14592 3' -59.5 NC_003521.1 + 74810 0.66 0.833429
Target:  5'- cGAGACGCggacGGaCGGCGCCgagCGCGAcgGCGu -3'
miRNA:   3'- -UUCUGCGa---CCaGUCGUGG---GCGCU--CGU- -5'
14592 3' -59.5 NC_003521.1 + 59147 0.66 0.825338
Target:  5'- -uGAaaaaGCUGGUggaucagcugCGGCACggcgCCGCGGGCAg -3'
miRNA:   3'- uuCUg---CGACCA----------GUCGUG----GGCGCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 112541 0.66 0.825338
Target:  5'- -cGGCgaGCUGGUCAGCACCauguuCGAGa- -3'
miRNA:   3'- uuCUG--CGACCAGUCGUGGgc---GCUCgu -5'
14592 3' -59.5 NC_003521.1 + 100420 0.66 0.825338
Target:  5'- -uGAUGgUGGUgagaagaagcggCGGCGCUCGgGAGCAg -3'
miRNA:   3'- uuCUGCgACCA------------GUCGUGGGCgCUCGU- -5'
14592 3' -59.5 NC_003521.1 + 205680 0.66 0.825338
Target:  5'- cGGGCGCgUGG-C-GCACCCGCGcucagucgcGGCGa -3'
miRNA:   3'- uUCUGCG-ACCaGuCGUGGGCGC---------UCGU- -5'
14592 3' -59.5 NC_003521.1 + 92164 0.66 0.817085
Target:  5'- uAGugGUUGG-CGGCcaucCCCGcCGAGCu -3'
miRNA:   3'- uUCugCGACCaGUCGu---GGGC-GCUCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.