miRNA display CGI


Results 1 - 20 of 441 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14593 3' -58.8 NC_003521.1 + 44775 0.66 0.875773
Target:  5'- -aGGCGGCCGguGCuGGCccuaGGCCgACAa -3'
miRNA:   3'- caCCGUCGGCuuUG-CCGcg--UCGG-UGU- -5'
14593 3' -58.8 NC_003521.1 + 117061 0.66 0.875773
Target:  5'- -aGGCGGCCGcgGAGCcG-GCGGUCACGc -3'
miRNA:   3'- caCCGUCGGC--UUUGcCgCGUCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 150663 0.66 0.875773
Target:  5'- -aGGCGGCUcuccgGcgGCGGCGCcGCUGCu -3'
miRNA:   3'- caCCGUCGG-----CuuUGCCGCGuCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 103369 0.66 0.875773
Target:  5'- aGUGcacGCAGaCCGuguCGG-GCAGCCGCGc -3'
miRNA:   3'- -CAC---CGUC-GGCuuuGCCgCGUCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 52037 0.66 0.875773
Target:  5'- uGUGGCGGggaCCcAGACGaGCaGCAGCgGCAg -3'
miRNA:   3'- -CACCGUC---GGcUUUGC-CG-CGUCGgUGU- -5'
14593 3' -58.8 NC_003521.1 + 188141 0.66 0.875773
Target:  5'- cUGGCAccGCCGAcGCuGcCGguGCCGCu -3'
miRNA:   3'- cACCGU--CGGCUuUGcC-GCguCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 186930 0.66 0.875773
Target:  5'- -cGGUGGCgGggGCGGCgGCGaaCGCAa -3'
miRNA:   3'- caCCGUCGgCuuUGCCG-CGUcgGUGU- -5'
14593 3' -58.8 NC_003521.1 + 155425 0.66 0.875773
Target:  5'- -aGGCcugcuGCCGGccaaGCGCAGCCGCu -3'
miRNA:   3'- caCCGu----CGGCUuugcCGCGUCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 221635 0.66 0.875773
Target:  5'- aUGGCcuuagcucGCCGcccGCGGUGUAGCCAg- -3'
miRNA:   3'- cACCGu-------CGGCuu-UGCCGCGUCGGUgu -5'
14593 3' -58.8 NC_003521.1 + 70139 0.66 0.875773
Target:  5'- -gGGCcucgAGCUGcgGCGaGCGCGGCUGCc -3'
miRNA:   3'- caCCG----UCGGCuuUGC-CGCGUCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 76037 0.66 0.875773
Target:  5'- -cGGCAGCuccuCGGAGCGG-GCcGCCAg- -3'
miRNA:   3'- caCCGUCG----GCUUUGCCgCGuCGGUgu -5'
14593 3' -58.8 NC_003521.1 + 151770 0.66 0.875773
Target:  5'- -aGGCAGCUGugGCGcGCcuGCAGgUACAg -3'
miRNA:   3'- caCCGUCGGCuuUGC-CG--CGUCgGUGU- -5'
14593 3' -58.8 NC_003521.1 + 18909 0.66 0.875773
Target:  5'- -cGGCAGCCccGAAGggUGGCGCcGCgCGCc -3'
miRNA:   3'- caCCGUCGG--CUUU--GCCGCGuCG-GUGu -5'
14593 3' -58.8 NC_003521.1 + 223116 0.66 0.875773
Target:  5'- aUGGCGGCCGucuc-GCGCAGCaC-CAg -3'
miRNA:   3'- cACCGUCGGCuuugcCGCGUCG-GuGU- -5'
14593 3' -58.8 NC_003521.1 + 101052 0.66 0.875773
Target:  5'- aUGGCGGCCGccGACGGCcggauccugccGuCGGCaCGCGg -3'
miRNA:   3'- cACCGUCGGCu-UUGCCG-----------C-GUCG-GUGU- -5'
14593 3' -58.8 NC_003521.1 + 60337 0.66 0.875773
Target:  5'- --uGCAGCCGGccAACcuGCGCAGCC-CGc -3'
miRNA:   3'- cacCGUCGGCU--UUGc-CGCGUCGGuGU- -5'
14593 3' -58.8 NC_003521.1 + 101967 0.66 0.875773
Target:  5'- -gGGguGCgaGAugggguccagcaGGCGGUGCAGCUGCGu -3'
miRNA:   3'- caCCguCGg-CU------------UUGCCGCGUCGGUGU- -5'
14593 3' -58.8 NC_003521.1 + 201263 0.66 0.875773
Target:  5'- -cGcGCAGCCaGAuggcCGGCGUcggGGCCACc -3'
miRNA:   3'- caC-CGUCGG-CUuu--GCCGCG---UCGGUGu -5'
14593 3' -58.8 NC_003521.1 + 95145 0.66 0.875773
Target:  5'- -aGGCGGCCGcgccGACGGCaaggaguCGGCCGg- -3'
miRNA:   3'- caCCGUCGGCu---UUGCCGc------GUCGGUgu -5'
14593 3' -58.8 NC_003521.1 + 32133 0.66 0.875773
Target:  5'- -aGGUAGCgGgcGCGGUGCaccaAGCgGCGg -3'
miRNA:   3'- caCCGUCGgCuuUGCCGCG----UCGgUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.