miRNA display CGI


Results 1 - 20 of 222 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14595 3' -56.9 NC_003521.1 + 86609 0.66 0.950043
Target:  5'- aGCGCuCGUGGUGGCgGUag--AGCAGg -3'
miRNA:   3'- -CGUG-GCACUACCGgCAgaggUCGUCg -5'
14595 3' -56.9 NC_003521.1 + 197325 0.66 0.950043
Target:  5'- gGCGCUGacgGAuguUGGCCGcCgcggCCAGCacGGCc -3'
miRNA:   3'- -CGUGGCa--CU---ACCGGCaGa---GGUCG--UCG- -5'
14595 3' -56.9 NC_003521.1 + 90811 0.66 0.950043
Target:  5'- cGUGCaCGUGAaGGUggCGUCgUCguGCGGCg -3'
miRNA:   3'- -CGUG-GCACUaCCG--GCAG-AGguCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 153484 0.66 0.950043
Target:  5'- gGCuCCGgcucgGGCCGUCUggUCAGCgccAGCg -3'
miRNA:   3'- -CGuGGCacua-CCGGCAGA--GGUCG---UCG- -5'
14595 3' -56.9 NC_003521.1 + 52586 0.66 0.950043
Target:  5'- cGCGCgGgcagcUGGUGGCCcgaaaggCCGGCAGUa -3'
miRNA:   3'- -CGUGgC-----ACUACCGGcaga---GGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 133617 0.66 0.950043
Target:  5'- aGCACUGUGugggcAUGGCCaGcCUCaagaAGCuGCu -3'
miRNA:   3'- -CGUGGCAC-----UACCGG-CaGAGg---UCGuCG- -5'
14595 3' -56.9 NC_003521.1 + 53217 0.66 0.950043
Target:  5'- uCGCCcUGGcaGGCCGUgCccaCCGGCAGCa -3'
miRNA:   3'- cGUGGcACUa-CCGGCA-Ga--GGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 115720 0.66 0.945924
Target:  5'- -gGCCGUGGU-GCCca-UCCcGCAGCg -3'
miRNA:   3'- cgUGGCACUAcCGGcagAGGuCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 208139 0.66 0.945924
Target:  5'- aGCcCCGUGGc-GCCucgaUCCGGCAGCu -3'
miRNA:   3'- -CGuGGCACUacCGGcag-AGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 117492 0.66 0.945924
Target:  5'- gGCGCUGg---GGCCGUCggugUUCGGaCGGCu -3'
miRNA:   3'- -CGUGGCacuaCCGGCAG----AGGUC-GUCG- -5'
14595 3' -56.9 NC_003521.1 + 139422 0.66 0.945924
Target:  5'- cGCACgGgcucuccugcGUGGCCGUCa--AGCGGCg -3'
miRNA:   3'- -CGUGgCac--------UACCGGCAGaggUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 143892 0.66 0.945924
Target:  5'- -gACCGcUGcGUGGCCGUaUUCCAGgAGa -3'
miRNA:   3'- cgUGGC-AC-UACCGGCA-GAGGUCgUCg -5'
14595 3' -56.9 NC_003521.1 + 80722 0.66 0.945924
Target:  5'- aGCGCCcUGAaGuCCGuguUCUCCAGCGGa -3'
miRNA:   3'- -CGUGGcACUaCcGGC---AGAGGUCGUCg -5'
14595 3' -56.9 NC_003521.1 + 211388 0.66 0.945924
Target:  5'- -gGCCGUcagGcGCCGgcUCUCguGCAGCa -3'
miRNA:   3'- cgUGGCAcuaC-CGGC--AGAGguCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 52088 0.66 0.945924
Target:  5'- cCACCaUGAgGGCCGcgCUCCAuuucCAGCu -3'
miRNA:   3'- cGUGGcACUaCCGGCa-GAGGUc---GUCG- -5'
14595 3' -56.9 NC_003521.1 + 106573 0.66 0.945924
Target:  5'- uGCACCG-GGucacccUGGCCGagggCggcgCgGGCAGCu -3'
miRNA:   3'- -CGUGGCaCU------ACCGGCa---Ga---GgUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 2109 0.66 0.9455
Target:  5'- uGCuGCCGgugcuaccuccucUGGUcaacgucccacGGCCGccgaccugCUCCAGCAGCa -3'
miRNA:   3'- -CG-UGGC-------------ACUA-----------CCGGCa-------GAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 202337 0.66 0.9455
Target:  5'- uGCuGCCGgugcuaccuccucUGGUcaacgucccacGGCCGccgaccugCUCCAGCAGCa -3'
miRNA:   3'- -CG-UGGC-------------ACUA-----------CCGGCa-------GAGGUCGUCG- -5'
14595 3' -56.9 NC_003521.1 + 59562 0.66 0.941587
Target:  5'- aCGCCGUGAUcgaaaacGCCgGUCUCUAcGUGGCc -3'
miRNA:   3'- cGUGGCACUAc------CGG-CAGAGGU-CGUCG- -5'
14595 3' -56.9 NC_003521.1 + 94632 0.66 0.941587
Target:  5'- cGCAgU-UGAagGGCCGUCcgCCGGcCAGCa -3'
miRNA:   3'- -CGUgGcACUa-CCGGCAGa-GGUC-GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.