miRNA display CGI


Results 1 - 20 of 204 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14595 5' -54.3 NC_003521.1 + 128809 0.66 0.986983
Target:  5'- cAGGCGCGuGAGGAaCUugACGAUGUagucgcggucuuuggUGCGg -3'
miRNA:   3'- aUCUGCGC-CUUCU-GG--UGCUGCA---------------ACGC- -5'
14595 5' -54.3 NC_003521.1 + 78523 0.66 0.986356
Target:  5'- -cGACGCGGAuuccgcGGACUccCGGCGUgacggUGCa -3'
miRNA:   3'- auCUGCGCCU------UCUGGu-GCUGCA-----ACGc -5'
14595 5' -54.3 NC_003521.1 + 146797 0.66 0.986356
Target:  5'- cGGACGauGAuccGGACCugGACGacgaGCGc -3'
miRNA:   3'- aUCUGCgcCU---UCUGGugCUGCaa--CGC- -5'
14595 5' -54.3 NC_003521.1 + 36771 0.66 0.986356
Target:  5'- -cGACuGCGGcgacuggcAGGGCCACG-CGcUGCGg -3'
miRNA:   3'- auCUG-CGCC--------UUCUGGUGCuGCaACGC- -5'
14595 5' -54.3 NC_003521.1 + 110806 0.66 0.986356
Target:  5'- -uGACGCuGAAaGCCAgCGGCcGUUGCGc -3'
miRNA:   3'- auCUGCGcCUUcUGGU-GCUG-CAACGC- -5'
14595 5' -54.3 NC_003521.1 + 196885 0.66 0.984687
Target:  5'- ---cCGCGGGugAGGCCGgGGCGgaagGCGg -3'
miRNA:   3'- aucuGCGCCU--UCUGGUgCUGCaa--CGC- -5'
14595 5' -54.3 NC_003521.1 + 83750 0.66 0.984687
Target:  5'- ---cCGCGGggGGCCugGGacaGggugGCGg -3'
miRNA:   3'- aucuGCGCCuuCUGGugCUg--Caa--CGC- -5'
14595 5' -54.3 NC_003521.1 + 76061 0.66 0.984687
Target:  5'- cAGACGCuuGAuGACgGCGAUGU-GCGg -3'
miRNA:   3'- aUCUGCGc-CUuCUGgUGCUGCAaCGC- -5'
14595 5' -54.3 NC_003521.1 + 113769 0.66 0.984687
Target:  5'- cAGGCGCGucGAcGACgGCGACGgccaGCGc -3'
miRNA:   3'- aUCUGCGC--CUuCUGgUGCUGCaa--CGC- -5'
14595 5' -54.3 NC_003521.1 + 4775 0.66 0.983614
Target:  5'- cAGACGCGGGuAcaucaucagcugccuGACCACGAag-UGCa -3'
miRNA:   3'- aUCUGCGCCU-U---------------CUGGUGCUgcaACGc -5'
14595 5' -54.3 NC_003521.1 + 117987 0.66 0.982867
Target:  5'- cAGA-GCGGucAGGACgACGACGguaGCGg -3'
miRNA:   3'- aUCUgCGCC--UUCUGgUGCUGCaa-CGC- -5'
14595 5' -54.3 NC_003521.1 + 40417 0.66 0.982867
Target:  5'- cGGGCGUgcaGGGAGGCCgaaGCGGCGgccggagccgUGCa -3'
miRNA:   3'- aUCUGCG---CCUUCUGG---UGCUGCa---------ACGc -5'
14595 5' -54.3 NC_003521.1 + 94420 0.66 0.982867
Target:  5'- -uGACGCGGcGGcCCAUGACGUc--- -3'
miRNA:   3'- auCUGCGCCuUCuGGUGCUGCAacgc -5'
14595 5' -54.3 NC_003521.1 + 238380 0.66 0.982867
Target:  5'- gGGGCGCGGGGaugaacGugCAgGGCGUcccaGCGg -3'
miRNA:   3'- aUCUGCGCCUU------CugGUgCUGCAa---CGC- -5'
14595 5' -54.3 NC_003521.1 + 221007 0.66 0.982867
Target:  5'- gAGACGauaGGAGGccagaACUGCGACGgcGCu -3'
miRNA:   3'- aUCUGCg--CCUUC-----UGGUGCUGCaaCGc -5'
14595 5' -54.3 NC_003521.1 + 93599 0.66 0.982867
Target:  5'- gAGaACGCuGAGGACC-CGGCuGggGCGa -3'
miRNA:   3'- aUC-UGCGcCUUCUGGuGCUG-CaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 240644 0.66 0.982867
Target:  5'- cGGGCGUgcaGGGAGGCCgaaGCGGCGgccggagccgUGCa -3'
miRNA:   3'- aUCUGCG---CCUUCUGG---UGCUGCa---------ACGc -5'
14595 5' -54.3 NC_003521.1 + 69409 0.66 0.982867
Target:  5'- cAGACGCGG--GACgGUGACGgcGCGc -3'
miRNA:   3'- aUCUGCGCCuuCUGgUGCUGCaaCGC- -5'
14595 5' -54.3 NC_003521.1 + 178236 0.66 0.982867
Target:  5'- gUGGAgGCucucgcacuGGuAGGCgGCGGCGUUGCu -3'
miRNA:   3'- -AUCUgCG---------CCuUCUGgUGCUGCAACGc -5'
14595 5' -54.3 NC_003521.1 + 95 0.66 0.982867
Target:  5'- cGGGCGUgcaGGGAGGCCgaaGCGGCGgccggagccgUGCa -3'
miRNA:   3'- aUCUGCG---CCUUCUGG---UGCUGCa---------ACGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.