miRNA display CGI


Results 1 - 20 of 162 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14596 3' -56.5 NC_003521.1 + 90160 0.66 0.957713
Target:  5'- --gCGgcGC-CGCCGCCggAGAGCCGcCu -3'
miRNA:   3'- agaGCauUGcGUGGCGG--UCUCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 60119 0.66 0.957713
Target:  5'- gCUgGUGACGCgACUGCUgagcgaGGAGgUGUCg -3'
miRNA:   3'- aGAgCAUUGCG-UGGCGG------UCUCgGCAG- -5'
14596 3' -56.5 NC_003521.1 + 17491 0.66 0.957713
Target:  5'- ---gGUAGCgGCGCCGCCGGucacGGCgGUUc -3'
miRNA:   3'- agagCAUUG-CGUGGCGGUC----UCGgCAG- -5'
14596 3' -56.5 NC_003521.1 + 150931 0.66 0.957713
Target:  5'- gCUCGguGCGgguuuucacaCACCGCCAGGuGgCGUCg -3'
miRNA:   3'- aGAGCauUGC----------GUGGCGGUCU-CgGCAG- -5'
14596 3' -56.5 NC_003521.1 + 202590 0.66 0.957713
Target:  5'- gUCUCGcccCGC-CCGCCGaGGCCGcCc -3'
miRNA:   3'- -AGAGCauuGCGuGGCGGUcUCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 213723 0.66 0.957713
Target:  5'- --cCGgccuGCGCGCCGUCgAGAGCCu-- -3'
miRNA:   3'- agaGCau--UGCGUGGCGG-UCUCGGcag -5'
14596 3' -56.5 NC_003521.1 + 187364 0.66 0.957713
Target:  5'- gCUCGcuggagGACGCccugGCCGCC-GAGCUGg- -3'
miRNA:   3'- aGAGCa-----UUGCG----UGGCGGuCUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 109715 0.66 0.957713
Target:  5'- uUCcCGgcagcCGCGCCGCCcc-GCCGUCc -3'
miRNA:   3'- -AGaGCauu--GCGUGGCGGucuCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 212840 0.66 0.957713
Target:  5'- gCUC---ACGCuGCCGCCGuGGCCGUg -3'
miRNA:   3'- aGAGcauUGCG-UGGCGGUcUCGGCAg -5'
14596 3' -56.5 NC_003521.1 + 210499 0.66 0.954008
Target:  5'- aCUCGcUGGCGCAgUUGCUGGAGCgCGgUCu -3'
miRNA:   3'- aGAGC-AUUGCGU-GGCGGUCUCG-GC-AG- -5'
14596 3' -56.5 NC_003521.1 + 234651 0.66 0.954008
Target:  5'- gUCUCGUucuGCGCcuggccCCGCCAGGgguuGCUGcUCu -3'
miRNA:   3'- -AGAGCAu--UGCGu-----GGCGGUCU----CGGC-AG- -5'
14596 3' -56.5 NC_003521.1 + 70106 0.66 0.954008
Target:  5'- cCUgGccGGCGUGCCGCCgaAGGGCCGc- -3'
miRNA:   3'- aGAgCa-UUGCGUGGCGG--UCUCGGCag -5'
14596 3' -56.5 NC_003521.1 + 94952 0.66 0.954008
Target:  5'- cCUCGUcgucGGCGCcgcccGCCGCCGG-GCCc-- -3'
miRNA:   3'- aGAGCA----UUGCG-----UGGCGGUCuCGGcag -5'
14596 3' -56.5 NC_003521.1 + 95323 0.66 0.954008
Target:  5'- aUCUCGUaGACGCGCgCGC-AGGGCUc-- -3'
miRNA:   3'- -AGAGCA-UUGCGUG-GCGgUCUCGGcag -5'
14596 3' -56.5 NC_003521.1 + 172048 0.66 0.953626
Target:  5'- aUCUC-UAGCGCGCugaggauguucugCGUCAGGaCCGUCa -3'
miRNA:   3'- -AGAGcAUUGCGUG-------------GCGGUCUcGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 143189 0.66 0.952855
Target:  5'- -aUCGUuuucUGCacauuucauucaugGCCagGCCGGAGCCGUCg -3'
miRNA:   3'- agAGCAuu--GCG--------------UGG--CGGUCUCGGCAG- -5'
14596 3' -56.5 NC_003521.1 + 126836 0.66 0.951682
Target:  5'- gCUCGcccacgAACuGCACCGCCAGgaacagcucgcggcaGGCCugcGUCa -3'
miRNA:   3'- aGAGCa-----UUG-CGUGGCGGUC---------------UCGG---CAG- -5'
14596 3' -56.5 NC_003521.1 + 36523 0.66 0.950089
Target:  5'- -aUCGUGACGCccaaAUCGuCCAGcGCCGa- -3'
miRNA:   3'- agAGCAUUGCG----UGGC-GGUCuCGGCag -5'
14596 3' -56.5 NC_003521.1 + 130131 0.66 0.950089
Target:  5'- -gUCGUcGGCgGCGCCGCCGcuGCCGcCa -3'
miRNA:   3'- agAGCA-UUG-CGUGGCGGUcuCGGCaG- -5'
14596 3' -56.5 NC_003521.1 + 30382 0.66 0.950089
Target:  5'- aUCUCGUAGCacaguaCGCUGCCGucGCCGcCc -3'
miRNA:   3'- -AGAGCAUUGc-----GUGGCGGUcuCGGCaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.