miRNA display CGI


Results 1 - 20 of 139 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14597 5' -53.3 NC_003521.1 + 62375 0.66 0.992736
Target:  5'- --gACGCGGuuGACguu--CACCCAGGCc -3'
miRNA:   3'- cagUGCGCU--UUGaccauGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 8407 0.66 0.992736
Target:  5'- -aCACGCaGgcGCUGGcguUGCcguGCCgCAGGCg -3'
miRNA:   3'- caGUGCG-CuuUGACC---AUG---UGG-GUCCG- -5'
14597 5' -53.3 NC_003521.1 + 196535 0.66 0.992736
Target:  5'- cGUCACGuCGu--Cg---GCGCCCAGGUg -3'
miRNA:   3'- -CAGUGC-GCuuuGaccaUGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 239753 0.66 0.991698
Target:  5'- gGUCGCGCGGcgagAGCUGGcGCAggucgguggcCCCGacgccGGCc -3'
miRNA:   3'- -CAGUGCGCU----UUGACCaUGU----------GGGU-----CCG- -5'
14597 5' -53.3 NC_003521.1 + 84673 0.66 0.991698
Target:  5'- cGUCGCagcaGCGccagcAGCUGcGUGCACaccuCCAGGCc -3'
miRNA:   3'- -CAGUG----CGCu----UUGAC-CAUGUG----GGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 102650 0.66 0.991698
Target:  5'- cGUC-CGUGAAGCg---GCugUCGGGCa -3'
miRNA:   3'- -CAGuGCGCUUUGaccaUGugGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 228049 0.66 0.991698
Target:  5'- cGUUAaGCGGAGCgguucGGUGCGUCUGGGCc -3'
miRNA:   3'- -CAGUgCGCUUUGa----CCAUGUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 75305 0.66 0.991698
Target:  5'- aUCugGUGuucauGCUGuGggGCGCCgAGGCg -3'
miRNA:   3'- cAGugCGCuu---UGAC-Ca-UGUGGgUCCG- -5'
14597 5' -53.3 NC_003521.1 + 39526 0.66 0.991698
Target:  5'- gGUCGCGCGGcgagAGCUGGcGCAggucgguggcCCCGacgccGGCc -3'
miRNA:   3'- -CAGUGCGCU----UUGACCaUGU----------GGGU-----CCG- -5'
14597 5' -53.3 NC_003521.1 + 178789 0.66 0.991698
Target:  5'- cGUC-CGCGGGACgGGcgagGCauGCCCggcGGGCg -3'
miRNA:   3'- -CAGuGCGCUUUGaCCa---UG--UGGG---UCCG- -5'
14597 5' -53.3 NC_003521.1 + 206240 0.66 0.991021
Target:  5'- -gCGCGCGccuGCagcccggcgucagccUGGUGCACCCcgaccacaAGGCc -3'
miRNA:   3'- caGUGCGCuu-UG---------------ACCAUGUGGG--------UCCG- -5'
14597 5' -53.3 NC_003521.1 + 18586 0.66 0.990546
Target:  5'- -gCGCGCucGACUGGUuccuGCGgCCCAGccGCg -3'
miRNA:   3'- caGUGCGcuUUGACCA----UGU-GGGUC--CG- -5'
14597 5' -53.3 NC_003521.1 + 184845 0.66 0.990546
Target:  5'- cUCGCGCcgcugcGACUGccgAC-CCCAGGCa -3'
miRNA:   3'- cAGUGCGcu----UUGACca-UGuGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 98524 0.66 0.990546
Target:  5'- -aCGCGCGcgGCUGGgccGCugCagcGGCg -3'
miRNA:   3'- caGUGCGCuuUGACCa--UGugGgu-CCG- -5'
14597 5' -53.3 NC_003521.1 + 120085 0.66 0.990546
Target:  5'- --gGCGCGccacCUGGUGC-CCCuGGUg -3'
miRNA:   3'- cagUGCGCuuu-GACCAUGuGGGuCCG- -5'
14597 5' -53.3 NC_003521.1 + 168154 0.66 0.990546
Target:  5'- --gGgGCGGAAUaGGggcgcCGCCCAGGCc -3'
miRNA:   3'- cagUgCGCUUUGaCCau---GUGGGUCCG- -5'
14597 5' -53.3 NC_003521.1 + 139452 0.66 0.990546
Target:  5'- --gGCGCGAcGGCUcGcGCACCCGGGa -3'
miRNA:   3'- cagUGCGCU-UUGAcCaUGUGGGUCCg -5'
14597 5' -53.3 NC_003521.1 + 90092 0.66 0.990546
Target:  5'- -gCGCGCGGuaaaaaagaAGCggugccuaGGUACGCCCccuaguGGGCg -3'
miRNA:   3'- caGUGCGCU---------UUGa-------CCAUGUGGG------UCCG- -5'
14597 5' -53.3 NC_003521.1 + 25860 0.66 0.990546
Target:  5'- --gACGCGAAccacGCUGugauCGCCCAGGa -3'
miRNA:   3'- cagUGCGCUU----UGACcau-GUGGGUCCg -5'
14597 5' -53.3 NC_003521.1 + 148341 0.66 0.989271
Target:  5'- -cCACGCccggaGAGGCUGGgagACcCCCgagcGGGCa -3'
miRNA:   3'- caGUGCG-----CUUUGACCa--UGuGGG----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.