miRNA display CGI


Results 1 - 20 of 206 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14598 3' -51.3 NC_003521.1 + 192251 0.66 0.998755
Target:  5'- gGGugGCCGUuaGCCGUCaCCUuc--ACCa -3'
miRNA:   3'- -CUugCGGCA--UGGCGGaGGAuauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 195009 0.66 0.998755
Target:  5'- --uCGCCGUGCCaguggccuucGCCUCCcccUAgaaACCa -3'
miRNA:   3'- cuuGCGGCAUGG----------CGGAGGau-AUa--UGG- -5'
14598 3' -51.3 NC_003521.1 + 61845 0.66 0.998755
Target:  5'- aGGGCGCCGcggaACCGCggcgCCUGUccAUGCg -3'
miRNA:   3'- -CUUGCGGCa---UGGCGga--GGAUA--UAUGg -5'
14598 3' -51.3 NC_003521.1 + 235401 0.66 0.998755
Target:  5'- cGACGCCGauuccuCCGCCucgUCCUcgGgcgagGCCc -3'
miRNA:   3'- cUUGCGGCau----GGCGG---AGGAuaUa----UGG- -5'
14598 3' -51.3 NC_003521.1 + 113285 0.66 0.998755
Target:  5'- cGACGgCGUGCUGCCgCCgcacAUGCUc -3'
miRNA:   3'- cUUGCgGCAUGGCGGaGGaua-UAUGG- -5'
14598 3' -51.3 NC_003521.1 + 13244 0.66 0.998755
Target:  5'- -cAUGCCucauCCGuCCUCCUAccUGCCg -3'
miRNA:   3'- cuUGCGGcau-GGC-GGAGGAUauAUGG- -5'
14598 3' -51.3 NC_003521.1 + 148959 0.66 0.998755
Target:  5'- --cCGCC--GCCGCCgUCCUGguccGCCg -3'
miRNA:   3'- cuuGCGGcaUGGCGG-AGGAUaua-UGG- -5'
14598 3' -51.3 NC_003521.1 + 196481 0.66 0.998755
Target:  5'- cGGC-CCGUuCCGCCUCCUcag-GCUc -3'
miRNA:   3'- cUUGcGGCAuGGCGGAGGAuauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 162080 0.66 0.998755
Target:  5'- cGugGCCGUGcCCGacgacaaCUCCUGgccgcucUACCg -3'
miRNA:   3'- cUugCGGCAU-GGCg------GAGGAUau-----AUGG- -5'
14598 3' -51.3 NC_003521.1 + 212854 0.66 0.998504
Target:  5'- cGugGCCGUGagCGCCgCCUGgcguuucUACCg -3'
miRNA:   3'- cUugCGGCAUg-GCGGaGGAUau-----AUGG- -5'
14598 3' -51.3 NC_003521.1 + 198424 0.66 0.998504
Target:  5'- uGACGCCGguUCGCCacUCCUAc--GCCa -3'
miRNA:   3'- cUUGCGGCauGGCGG--AGGAUauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 162626 0.66 0.998504
Target:  5'- cGAGCGCCGcGCC-CgCUCCgcac-GCCg -3'
miRNA:   3'- -CUUGCGGCaUGGcG-GAGGauauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 235034 0.66 0.998504
Target:  5'- cGGAgGCCGUACU-CCUCUcAUGagGCCg -3'
miRNA:   3'- -CUUgCGGCAUGGcGGAGGaUAUa-UGG- -5'
14598 3' -51.3 NC_003521.1 + 188165 0.66 0.998504
Target:  5'- --cCGCUGcUGCCGCuCUCUgaagcGUGCCg -3'
miRNA:   3'- cuuGCGGC-AUGGCG-GAGGaua--UAUGG- -5'
14598 3' -51.3 NC_003521.1 + 180942 0.66 0.998504
Target:  5'- uGGCGCgGUGCCGUaguccgcggggCUCCUGgaucuCCa -3'
miRNA:   3'- cUUGCGgCAUGGCG-----------GAGGAUauau-GG- -5'
14598 3' -51.3 NC_003521.1 + 85569 0.66 0.998504
Target:  5'- aGGCGCCGccGCCGCCgCCcccc-ACCa -3'
miRNA:   3'- cUUGCGGCa-UGGCGGaGGauauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 209275 0.66 0.998504
Target:  5'- -cGCGCCauuCgGCCUCCaGUAcACCg -3'
miRNA:   3'- cuUGCGGcauGgCGGAGGaUAUaUGG- -5'
14598 3' -51.3 NC_003521.1 + 165269 0.66 0.998504
Target:  5'- aGGGCGCUGgcguaGCCGCCgCCggc--GCCg -3'
miRNA:   3'- -CUUGCGGCa----UGGCGGaGGauauaUGG- -5'
14598 3' -51.3 NC_003521.1 + 105315 0.66 0.998504
Target:  5'- gGGACGCCGcgcgacgucGCCGCUUUCgguuuUAUGUGCg -3'
miRNA:   3'- -CUUGCGGCa--------UGGCGGAGG-----AUAUAUGg -5'
14598 3' -51.3 NC_003521.1 + 176371 0.66 0.998504
Target:  5'- -cACGCUGUAuCCGCgUUCCaAUGcACCg -3'
miRNA:   3'- cuUGCGGCAU-GGCG-GAGGaUAUaUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.