miRNA display CGI


Results 1 - 20 of 217 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
14598 5' -54.3 NC_003521.1 + 165643 0.66 0.978487
Target:  5'- -cGGUGUUGAGCaGCAGCAc---GCCg -3'
miRNA:   3'- cuCUACGAUUCGcCGUCGUuccuCGG- -5'
14598 5' -54.3 NC_003521.1 + 38166 0.66 0.978487
Target:  5'- uAGGUGCaGGGCGuccCAGC--GGGGCCg -3'
miRNA:   3'- cUCUACGaUUCGCc--GUCGuuCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 141963 0.66 0.978487
Target:  5'- ---cUGCUGGGCGaCgAGCGucAGGAGCUg -3'
miRNA:   3'- cucuACGAUUCGCcG-UCGU--UCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 125964 0.66 0.978487
Target:  5'- -cGAUGaacAGCGGCAGCAcgcuaAGGcGCa -3'
miRNA:   3'- cuCUACgauUCGCCGUCGU-----UCCuCGg -5'
14598 5' -54.3 NC_003521.1 + 168925 0.66 0.978487
Target:  5'- -uGAUGCgagGAGgGcGCAgGCAGGGccGCCg -3'
miRNA:   3'- cuCUACGa--UUCgC-CGU-CGUUCCu-CGG- -5'
14598 5' -54.3 NC_003521.1 + 213525 0.66 0.978487
Target:  5'- -cGGUGaggauGGCgGGCAGCucGGAGCa -3'
miRNA:   3'- cuCUACgau--UCG-CCGUCGuuCCUCGg -5'
14598 5' -54.3 NC_003521.1 + 7434 0.66 0.978487
Target:  5'- cGAGAcgGC--AGCGGCAGCuccGGAuCCc -3'
miRNA:   3'- -CUCUa-CGauUCGCCGUCGuu-CCUcGG- -5'
14598 5' -54.3 NC_003521.1 + 183902 0.66 0.978487
Target:  5'- cGAGGUGCUGgaGGCGGU-GCugcGGcGCUg -3'
miRNA:   3'- -CUCUACGAU--UCGCCGuCGuu-CCuCGG- -5'
14598 5' -54.3 NC_003521.1 + 135747 0.66 0.978487
Target:  5'- ---cUGCgguGGUGGCGGCGguGGGAucGCCc -3'
miRNA:   3'- cucuACGau-UCGCCGUCGU--UCCU--CGG- -5'
14598 5' -54.3 NC_003521.1 + 116886 0.66 0.978257
Target:  5'- -cGcgGCU--GCGGCGGCGcgccggcGGGAGaCCc -3'
miRNA:   3'- cuCuaCGAuuCGCCGUCGU-------UCCUC-GG- -5'
14598 5' -54.3 NC_003521.1 + 161235 0.66 0.976103
Target:  5'- uGGcgGCggcAGCGGCAGU-AGcGGCCa -3'
miRNA:   3'- cUCuaCGau-UCGCCGUCGuUCcUCGG- -5'
14598 5' -54.3 NC_003521.1 + 52956 0.66 0.976103
Target:  5'- cGAGGUGgUGAccGCcaugcaacaGGCGGUGAGGAagGCCg -3'
miRNA:   3'- -CUCUACgAUU--CG---------CCGUCGUUCCU--CGG- -5'
14598 5' -54.3 NC_003521.1 + 46395 0.66 0.976103
Target:  5'- cGGGGUGCgugGGGCGcGCGgGCcAGGaAGCg -3'
miRNA:   3'- -CUCUACGa--UUCGC-CGU-CGuUCC-UCGg -5'
14598 5' -54.3 NC_003521.1 + 76535 0.66 0.976103
Target:  5'- uGGcUGCUGcuGCGGUGGCuguccAGGAGCg -3'
miRNA:   3'- cUCuACGAUu-CGCCGUCGu----UCCUCGg -5'
14598 5' -54.3 NC_003521.1 + 150663 0.66 0.976103
Target:  5'- aGGcgGCUcuccGGCGGCGGCGccgcugcugcuGGGuGCUg -3'
miRNA:   3'- cUCuaCGAu---UCGCCGUCGU-----------UCCuCGG- -5'
14598 5' -54.3 NC_003521.1 + 155882 0.66 0.976103
Target:  5'- gGAGAUGCUGcugaaGGCGcuGCA-CGAGGAuacgGCCc -3'
miRNA:   3'- -CUCUACGAU-----UCGC--CGUcGUUCCU----CGG- -5'
14598 5' -54.3 NC_003521.1 + 58674 0.66 0.976103
Target:  5'- -uGAcGC-AGGUGaGCAGCGAGGucauGCCu -3'
miRNA:   3'- cuCUaCGaUUCGC-CGUCGUUCCu---CGG- -5'
14598 5' -54.3 NC_003521.1 + 100690 0.66 0.974323
Target:  5'- -uGAUGCUGAugcggaggcgccgccGCGGCcgcugauggaggaGGCGGGGGGUUc -3'
miRNA:   3'- cuCUACGAUU---------------CGCCG-------------UCGUUCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 148391 0.66 0.973531
Target:  5'- --cGUGUUGAcGCGGUccacguGCgAGGGAGCCa -3'
miRNA:   3'- cucUACGAUU-CGCCGu-----CG-UUCCUCGG- -5'
14598 5' -54.3 NC_003521.1 + 200329 0.66 0.973531
Target:  5'- cGAGAUGCgcuGCGGCGcCGuGGcgcGCCg -3'
miRNA:   3'- -CUCUACGauuCGCCGUcGUuCCu--CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.